Variant report

Variant	rs3133617
Chromosome Location	chr8:95625006-95625007
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:95623738..95626800-chr8:95626860..95629340,3	MCF-7	breast:
2	chr8:95624791..95625744-chr8:95725282..95726261,6	MCF-7	breast:
3	chr8:95624009..95626197-chr8:95669296..95672015,3	MCF-7	breast:
4	chr8:95624092..95627047-chr8:95730891..95733551,3	MCF-7	breast:
5	chr8:95621309..95623391-chr8:95623909..95625717,2	MCF-7	breast:
6	chr8:95623526..95627073-chr8:95722461..95725966,5	MCF-7	breast:
7	chr8:95617461..95631086-chr8:95649496..95657317,31	MCF-7	breast:
8	chr8:95624823..95625409-chr8:95652265..95653134,2	MCF-7	breast:
9	chr8:95604279..95604876-chr8:95624972..95625755,2	MCF-7	breast:
10	chr8:95624896..95625420-chr8:95654585..95655148,2	MCF-7	breast:
11	chr8:95620423..95628872-chr8:95649966..95659787,20	MCF-7	breast:
12	chr8:95624726..95625394-chr8:95917214..95918137,2	K562	blood:
13	chr8:95624812..95627051-chr8:95634961..95636636,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000156162	Chromatin interaction
ENSG00000104413	Chromatin interaction
ENSG00000261437	Chromatin interaction
ENSG00000199701	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10109309	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3096602	0.90[EUR][1000 genomes]
rs3096605	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3099416	0.90[EUR][1000 genomes]
rs3099421	0.83[EUR][1000 genomes]
rs3099423	0.85[EUR][1000 genomes]
rs3099424	0.85[EUR][1000 genomes]
rs3102849	0.85[EUR][1000 genomes]
rs3133597	0.85[EUR][1000 genomes]
rs3133598	0.85[EUR][1000 genomes]
rs3133599	0.85[EUR][1000 genomes]
rs3133606	0.90[EUR][1000 genomes]
rs3133607	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3133612	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3133613	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3133614	0.95[ASN][1000 genomes]
rs3133616	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3133623	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3133624	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3133626	0.81[EUR][1000 genomes]
rs3133661	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv429928	chr8:95488800-95672033	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv429929	chr8:95564533-95676894	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv516679	chr8:95616980-95638496	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95625000-95625200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr8:95625000-95625400	Enhancers	Pancreas	Pancrea
3	chr8:95625000-95625800	Enhancers	Placenta	Placenta
4	chr8:95625000-95626000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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