Variant report

Variant	rs3133623
Chromosome Location	chr8:95630970-95630971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95629504..95633109-chr8:95649425..95654422,6	MCF-7	breast:
2	chr8:95617461..95631086-chr8:95649496..95657317,31	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104413	Chromatin interaction
ENSG00000261437	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10109309	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3096602	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs3096605	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3098713	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs3098717	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs3098723	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs3099408	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs3099411	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs3099416	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes]
rs3099419	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs3099421	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs3099423	0.85[EUR][1000 genomes]
rs3099424	0.85[EUR][1000 genomes]
rs3102844	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs3102849	0.85[EUR][1000 genomes]
rs3102858	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs3102866	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs3102870	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs3133597	0.85[EUR][1000 genomes]
rs3133598	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs3133599	0.85[EUR][1000 genomes]
rs3133606	0.90[EUR][1000 genomes]
rs3133607	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3133612	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3133613	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3133614	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3133616	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3133617	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3133624	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3133626	0.81[EUR][1000 genomes]
rs3133644	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs3133647	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs3133652	1.00[CEU][hapmap]
rs3133661	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv429928	chr8:95488800-95672033	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv429929	chr8:95564533-95676894	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv516679	chr8:95616980-95638496	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95625600-95635600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:95626400-95632400	Weak transcription	Rectal Mucosa Donor 31	rectum

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