Variant report

Variant	rs3133606
Chromosome Location	chr8:95599779-95599780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr8:95599586-95599831	T-47D	breast:	n/a	chr8:95599717-95599732 chr8:95599658-95599673

Variant related genes	Relation type
ENSG00000254190	TF binding region

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10109309	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3096602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3096605	0.86[EUR][1000 genomes]
rs3098713	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3098717	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3098720	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3098723	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3098726	0.88[EUR][1000 genomes]
rs3099408	0.88[EUR][1000 genomes]
rs3099409	0.88[EUR][1000 genomes]
rs3099411	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3099415	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3099416	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3099417	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3099419	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3099421	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3099423	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3099424	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3102843	0.88[EUR][1000 genomes]
rs3102844	0.88[EUR][1000 genomes]
rs3102849	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3102858	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3102863	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3102864	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3102866	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3102868	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3102869	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3102870	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3102871	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3102872	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3102873	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3102876	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3133597	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3133598	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3133599	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3133607	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3133612	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3133613	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3133614	0.81[ASN][1000 genomes]
rs3133616	0.88[EUR][1000 genomes]
rs3133617	0.90[EUR][1000 genomes]
rs3133623	0.90[EUR][1000 genomes]
rs3133624	0.88[EUR][1000 genomes]
rs3133638	0.88[EUR][1000 genomes]
rs3133642	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3133643	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3133644	0.82[ASN][1000 genomes]
rs3133647	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3133650	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3133652	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3133653	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3133661	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34432191	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36040483	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv429928	chr8:95488800-95672033	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv429929	chr8:95564533-95676894	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv520435	chr8:95598598-95608367	Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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