Variant report

Variant	rs3099855
Chromosome Location	chr10:26041504-26041505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2437408	0.82[ASN][1000 genomes]
rs2442842	0.82[ASN][1000 genomes]
rs2442843	0.82[ASN][1000 genomes]
rs2442851	0.82[ASN][1000 genomes]
rs2505465	0.90[EUR][1000 genomes]
rs2505466	0.82[ASN][1000 genomes]
rs2505467	0.82[ASN][1000 genomes]
rs2505469	0.95[ASN][1000 genomes]
rs2505475	0.91[ASN][1000 genomes]
rs2505477	0.91[ASN][1000 genomes]
rs2505478	0.91[ASN][1000 genomes]
rs2505484	0.82[ASN][1000 genomes]
rs3099854	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894973	chr10:26020424-26043071	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26038200-26046400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26038800-26044800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:26041000-26045000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:26041400-26041800	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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