Variant report

Variant	rs2437408
Chromosome Location	chr10:26071477-26071478
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26070108..26071953-chr10:26073853..26075494,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10218959	0.80[ASN][1000 genomes]
rs11014744	0.81[ASN][1000 genomes]
rs11014745	0.80[ASN][1000 genomes]
rs11014746	0.80[ASN][1000 genomes]
rs12241358	0.80[ASN][1000 genomes]
rs12248775	0.80[ASN][1000 genomes]
rs12258824	0.80[ASN][1000 genomes]
rs12260808	0.80[ASN][1000 genomes]
rs12261856	0.80[ASN][1000 genomes]
rs12263936	0.85[ASN][1000 genomes]
rs13377122	0.80[ASN][1000 genomes]
rs16926353	0.80[ASN][1000 genomes]
rs2437405	0.85[ASN][1000 genomes]
rs2437409	0.85[ASN][1000 genomes]
rs2442833	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2442839	0.85[ASN][1000 genomes]
rs2442842	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442843	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442851	0.81[ASN][1000 genomes]
rs2505466	0.81[ASN][1000 genomes]
rs2505467	0.81[ASN][1000 genomes]
rs2505469	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2505475	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2505477	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2505478	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2505484	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505498	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3099854	0.81[ASN][1000 genomes]
rs3099855	0.82[ASN][1000 genomes]
rs57317460	0.80[ASN][1000 genomes]
rs7070912	0.80[ASN][1000 genomes]
rs7089251	0.80[ASN][1000 genomes]
rs7093719	0.80[ASN][1000 genomes]
rs7100717	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv975061	chr10:26066207-26072547	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2437408	FKRP	trans	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26066200-26071600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr10:26066200-26076400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr10:26066200-26082800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr10:26069000-26077600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:26069800-26082800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:26071200-26073200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr10:26071400-26072800	Enhancers	H1 Cell Line	embryonic stem cell

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