Variant report

Variant	rs7070912
Chromosome Location	chr10:26055390-26055391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10218959	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014725	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11014729	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11014744	0.89[ASN][1000 genomes]
rs11014745	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014746	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12241358	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12248775	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251368	0.94[ASN][1000 genomes]
rs12258824	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12260808	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261856	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263936	0.94[ASN][1000 genomes]
rs13377122	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926345	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16926353	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2437405	0.94[ASN][1000 genomes]
rs2437408	0.80[ASN][1000 genomes]
rs2437409	0.94[ASN][1000 genomes]
rs2442839	0.94[ASN][1000 genomes]
rs2442842	0.80[ASN][1000 genomes]
rs2442843	0.80[ASN][1000 genomes]
rs2442851	0.89[ASN][1000 genomes]
rs2505466	0.89[ASN][1000 genomes]
rs2505467	0.89[ASN][1000 genomes]
rs2505468	0.80[ASN][1000 genomes]
rs2505475	0.80[ASN][1000 genomes]
rs2505477	0.80[ASN][1000 genomes]
rs2505478	0.80[ASN][1000 genomes]
rs2505484	0.80[ASN][1000 genomes]
rs3099854	0.89[ASN][1000 genomes]
rs4335440	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57317460	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57474623	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7089251	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093719	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100717	0.94[ASN][1000 genomes]
rs723369	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs723370	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs723371	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7475986	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26043200-26057400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:26051000-26055600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:26053400-26055400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr10:26053600-26055400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:26053800-26055400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr10:26054000-26055400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr10:26054400-26055400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr10:26054400-26055400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:26054400-26055400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:26054400-26055400	Enhancers	Brain Germinal Matrix	brain
11	chr10:26054400-26055600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr10:26054400-26056800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:26054800-26055400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:26054800-26055400	Enhancers	Fetal Brain Female	brain
15	chr10:26054800-26055400	Enhancers	K562	blood
16	chr10:26055000-26055600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:26055000-26055600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr10:26055000-26055600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr10:26055000-26056600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:26055200-26055400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:26055200-26055600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr10:26055200-26055600	Bivalent Enhancer	Fetal Brain Male	brain
23	chr10:26055200-26056000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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