Variant report

Variant	rs723371
Chromosome Location	chr10:26042980-26042981
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10218959	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11014725	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014729	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014744	0.84[ASN][1000 genomes]
rs11014745	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11014746	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12241358	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12248775	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12251368	1.00[ASN][1000 genomes]
rs12258824	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12260808	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12261856	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12263936	0.89[ASN][1000 genomes]
rs13377122	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16926345	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16926353	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2437405	0.89[ASN][1000 genomes]
rs2437409	0.89[ASN][1000 genomes]
rs2442839	0.89[ASN][1000 genomes]
rs2442851	0.95[ASN][1000 genomes]
rs2505466	0.95[ASN][1000 genomes]
rs2505467	0.95[ASN][1000 genomes]
rs2505468	0.85[ASN][1000 genomes]
rs2505469	0.81[ASN][1000 genomes]
rs3099854	0.95[ASN][1000 genomes]
rs4335440	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55995012	0.81[ASN][1000 genomes]
rs57317460	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57474623	0.95[EUR][1000 genomes]
rs7070912	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7089251	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7093719	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7100717	0.89[ASN][1000 genomes]
rs723369	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723370	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7475986	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894973	chr10:26020424-26043071	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26038200-26046400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26038800-26044800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:26041000-26045000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:26042400-26043600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:26042600-26043000	Active TSS	Monocytes-CD14+_RO01746	blood
6	chr10:26042600-26043200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:26042600-26043200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr10:26042800-26043200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:26042800-26043200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr10:26042800-26043200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:26042800-26051000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links