Variant report

Variant	rs2437405
Chromosome Location	chr10:26068296-26068297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10218959	0.94[ASN][1000 genomes]
rs11014725	0.89[ASN][1000 genomes]
rs11014729	0.89[ASN][1000 genomes]
rs11014744	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11014745	0.94[ASN][1000 genomes]
rs11014746	0.94[ASN][1000 genomes]
rs12241358	0.94[ASN][1000 genomes]
rs12248775	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12251368	0.89[ASN][1000 genomes]
rs12258824	0.94[ASN][1000 genomes]
rs12260808	0.94[ASN][1000 genomes]
rs12261856	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12263936	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377122	0.94[ASN][1000 genomes]
rs16926345	0.89[ASN][1000 genomes]
rs16926353	0.94[ASN][1000 genomes]
rs2437408	0.85[ASN][1000 genomes]
rs2437409	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442833	0.81[ASN][1000 genomes]
rs2442839	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442842	0.85[ASN][1000 genomes]
rs2442843	0.85[ASN][1000 genomes]
rs2442849	0.84[EUR][1000 genomes]
rs2442851	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2505466	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2505467	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2505468	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2505469	0.81[ASN][1000 genomes]
rs2505475	0.85[ASN][1000 genomes]
rs2505477	0.85[ASN][1000 genomes]
rs2505478	0.85[ASN][1000 genomes]
rs2505484	0.85[ASN][1000 genomes]
rs2505498	0.81[ASN][1000 genomes]
rs3099854	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57317460	0.94[ASN][1000 genomes]
rs7070912	0.94[ASN][1000 genomes]
rs7089251	0.94[ASN][1000 genomes]
rs7093719	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7100717	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723369	0.89[ASN][1000 genomes]
rs723370	0.89[ASN][1000 genomes]
rs723371	0.89[ASN][1000 genomes]
rs7475986	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv975061	chr10:26066207-26072547	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26066200-26071600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr10:26066200-26076400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr10:26066200-26082800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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