Variant report

Variant	rs3099854
Chromosome Location	chr10:26045120-26045121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10218959	0.89[ASN][1000 genomes]
rs11014725	0.95[ASN][1000 genomes]
rs11014729	0.95[ASN][1000 genomes]
rs11014744	0.89[ASN][1000 genomes]
rs11014745	0.89[ASN][1000 genomes]
rs11014746	0.89[ASN][1000 genomes]
rs12241358	0.89[ASN][1000 genomes]
rs12248775	0.89[ASN][1000 genomes]
rs12251368	0.95[ASN][1000 genomes]
rs12258824	0.89[ASN][1000 genomes]
rs12260808	0.89[ASN][1000 genomes]
rs12261856	0.89[ASN][1000 genomes]
rs12263936	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13377122	0.89[ASN][1000 genomes]
rs16926345	0.84[ASN][1000 genomes]
rs16926353	0.89[ASN][1000 genomes]
rs2437405	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2437408	0.81[ASN][1000 genomes]
rs2437409	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2442839	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2442842	0.81[ASN][1000 genomes]
rs2442843	0.81[ASN][1000 genomes]
rs2442849	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2442851	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505466	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505467	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505468	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2505469	0.86[ASN][1000 genomes]
rs2505475	0.81[ASN][1000 genomes]
rs2505477	0.81[ASN][1000 genomes]
rs2505478	0.81[ASN][1000 genomes]
rs2505484	0.81[ASN][1000 genomes]
rs3099855	0.82[ASN][1000 genomes]
rs4335440	0.85[ASN][1000 genomes]
rs57317460	0.89[ASN][1000 genomes]
rs7070912	0.89[ASN][1000 genomes]
rs7089251	0.89[ASN][1000 genomes]
rs7093719	0.89[ASN][1000 genomes]
rs7100717	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs723369	0.95[ASN][1000 genomes]
rs723370	0.95[ASN][1000 genomes]
rs723371	0.95[ASN][1000 genomes]
rs7475986	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26038200-26046400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26042800-26051000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:26043200-26046400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:26043200-26046600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr10:26043200-26046800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:26043200-26057400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:26043400-26045200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr10:26043800-26046800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:26044200-26046600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:26045000-26046200	Weak transcription	Primary monocytes fromperipheralblood	blood

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