Variant report

Variant	rs12251368
Chromosome Location	chr10:26041997-26041998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10218959	0.94[ASN][1000 genomes]
rs11014725	1.00[ASN][1000 genomes]
rs11014729	1.00[ASN][1000 genomes]
rs11014744	0.84[ASN][1000 genomes]
rs11014745	0.94[ASN][1000 genomes]
rs11014746	0.94[ASN][1000 genomes]
rs12241358	0.94[ASN][1000 genomes]
rs12248775	0.94[ASN][1000 genomes]
rs12258824	0.94[ASN][1000 genomes]
rs12260808	0.94[ASN][1000 genomes]
rs12261856	0.94[ASN][1000 genomes]
rs12263936	0.89[ASN][1000 genomes]
rs13377122	0.94[ASN][1000 genomes]
rs16926345	0.89[ASN][1000 genomes]
rs16926353	0.94[ASN][1000 genomes]
rs2437405	0.89[ASN][1000 genomes]
rs2437409	0.89[ASN][1000 genomes]
rs2442839	0.89[ASN][1000 genomes]
rs2442851	0.95[ASN][1000 genomes]
rs2505466	0.95[ASN][1000 genomes]
rs2505467	0.95[ASN][1000 genomes]
rs2505468	0.85[ASN][1000 genomes]
rs2505469	0.81[ASN][1000 genomes]
rs3099854	0.95[ASN][1000 genomes]
rs4335440	0.90[ASN][1000 genomes]
rs55995012	0.81[ASN][1000 genomes]
rs57317460	0.94[ASN][1000 genomes]
rs7070912	0.94[ASN][1000 genomes]
rs7089251	0.94[ASN][1000 genomes]
rs7093719	0.94[ASN][1000 genomes]
rs7100717	0.89[ASN][1000 genomes]
rs723369	1.00[ASN][1000 genomes]
rs723370	1.00[ASN][1000 genomes]
rs723371	1.00[ASN][1000 genomes]
rs7475986	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894973	chr10:26020424-26043071	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26038200-26046400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26038800-26044800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:26041000-26045000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:26041800-26042000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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