Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11014725	0.81[ASN][1000 genomes]
rs11014729	0.81[ASN][1000 genomes]
rs12251368	0.81[ASN][1000 genomes]
rs12263936	0.81[ASN][1000 genomes]
rs2437405	0.81[ASN][1000 genomes]
rs2437408	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2437409	0.81[ASN][1000 genomes]
rs2442833	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2442839	0.81[ASN][1000 genomes]
rs2442842	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2442843	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2442851	0.86[ASN][1000 genomes]
rs2505466	0.86[ASN][1000 genomes]
rs2505467	0.86[ASN][1000 genomes]
rs2505475	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2505477	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2505478	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2505484	0.86[ASN][1000 genomes]
rs2505498	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3099854	0.86[ASN][1000 genomes]
rs3099855	0.95[ASN][1000 genomes]
rs55995012	0.82[ASN][1000 genomes]
rs7100717	0.81[ASN][1000 genomes]
rs723369	0.81[ASN][1000 genomes]
rs723370	0.81[ASN][1000 genomes]
rs723371	0.81[ASN][1000 genomes]
rs7475986	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26042800-26051000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:26043200-26046600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr10:26043200-26046800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr10:26043200-26057400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:26043800-26046800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:26044200-26046600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:26045600-26046800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:26046400-26046600	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr10:26046400-26046800	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr10:26046400-26047400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:26046400-26047400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr10:26046400-26047600	Enhancers	Brain Germinal Matrix	brain

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