Variant report

Variant	rs3108590
Chromosome Location	chr19:37235260-37235261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10402486	0.91[ASN][1000 genomes]
rs10407386	0.81[ASN][1000 genomes]
rs11084862	0.83[ASN][1000 genomes]
rs11669642	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11672680	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12610353	0.88[ASN][1000 genomes]
rs12986045	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12986257	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1830031	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2033077	0.80[ASN][1000 genomes]
rs2245366	0.83[AMR][1000 genomes]
rs2385564	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2385643	0.80[ASN][1000 genomes]
rs3096622	0.80[ASN][1000 genomes]
rs3096623	0.80[ASN][1000 genomes]
rs3096627	0.80[ASN][1000 genomes]
rs3096628	0.80[ASN][1000 genomes]
rs3096629	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3096630	0.82[ASN][1000 genomes]
rs3096631	0.82[ASN][1000 genomes]
rs3096632	0.82[ASN][1000 genomes]
rs3096636	0.84[ASN][1000 genomes]
rs3108166	0.91[ASN][1000 genomes]
rs3108167	0.88[ASN][1000 genomes]
rs3108168	0.85[ASN][1000 genomes]
rs3108172	0.89[ASN][1000 genomes]
rs3108174	0.88[ASN][1000 genomes]
rs3108179	0.88[ASN][1000 genomes]
rs3108181	0.86[ASN][1000 genomes]
rs3108182	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs3108184	0.96[ASN][1000 genomes]
rs3108185	0.96[ASN][1000 genomes]
rs3108186	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3108187	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3108188	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3108189	0.91[ASN][1000 genomes]
rs3108190	0.83[ASN][1000 genomes]
rs3108193	0.91[ASN][1000 genomes]
rs3108196	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3108197	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3108201	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3108203	0.91[ASN][1000 genomes]
rs3108205	0.93[ASN][1000 genomes]
rs3108208	0.91[ASN][1000 genomes]
rs3108209	0.91[ASN][1000 genomes]
rs3108212	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3108214	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3108215	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3108218	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3108219	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3108543	0.81[ASN][1000 genomes]
rs3108544	0.89[ASN][1000 genomes]
rs3108545	0.91[ASN][1000 genomes]
rs3108546	0.89[ASN][1000 genomes]
rs3108549	0.92[ASN][1000 genomes]
rs3108550	0.91[ASN][1000 genomes]
rs3108552	0.91[ASN][1000 genomes]
rs3108555	0.93[ASN][1000 genomes]
rs3108559	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3108560	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3108562	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3108563	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3108564	0.96[ASN][1000 genomes]
rs3108565	0.99[ASN][1000 genomes]
rs3108566	0.88[ASN][1000 genomes]
rs3108568	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3108570	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3108572	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3108573	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3108574	0.88[ASN][1000 genomes]
rs3108575	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3108576	0.88[ASN][1000 genomes]
rs3108577	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3108579	0.99[ASN][1000 genomes]
rs3108583	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3108585	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3108589	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3108591	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3108592	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3108600	0.80[ASN][1000 genomes]
rs3108602	0.80[ASN][1000 genomes]
rs3108603	0.80[ASN][1000 genomes]
rs3108607	0.88[ASN][1000 genomes]
rs3108608	0.91[ASN][1000 genomes]
rs3108609	0.81[ASN][1000 genomes]
rs3108610	0.91[ASN][1000 genomes]
rs3111547	0.80[ASN][1000 genomes]
rs34002069	0.91[ASN][1000 genomes]
rs34395293	0.80[ASN][1000 genomes]
rs34629452	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35127048	0.83[AMR][1000 genomes]
rs35265584	0.81[AMR][1000 genomes]
rs35313661	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs35815897	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4092391	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4806336	0.80[ASN][1000 genomes]
rs4806350	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4806351	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58381108	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7245414	0.91[ASN][1000 genomes]
rs7248477	0.91[ASN][1000 genomes]
rs7250376	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7258563	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7259256	0.83[ASN][1000 genomes]
rs73037149	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs8105197	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv469794	chr19:37129858-37310257	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv482392	chr19:37129858-37310257	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv34384	chr19:37134068-37330613	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv817833	chr19:37146694-37357289	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	nsv470139	chr19:37171201-37264190	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
11	esv3517005	chr19:37193712-37364110	Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
12	esv3517004	chr19:37193762-37363960	ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
13	esv3517006	chr19:37193762-37363960	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
14	nsv911649	chr19:37203249-37257192	ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
15	esv3508979	chr19:37208161-37252433	ZNF genes & repeats Weak transcription Strong transcription Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
16	esv3508980	chr19:37208161-37252433	ZNF genes & repeats Weak transcription Strong transcription Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
17	esv3353886	chr19:37220161-37248967	ZNF genes & repeats Weak transcription Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37194000-37254000	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:37194400-37253800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr19:37194600-37258800	ZNF genes & repeats	Liver	Liver
4	chr19:37220200-37253800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:37230800-37254000	ZNF genes & repeats	Left Ventricle	heart
6	chr19:37231000-37254000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
7	chr19:37231600-37237600	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
8	chr19:37234000-37245200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
9	chr19:37234000-37246200	ZNF genes & repeats	Brain Anterior Caudate	brain
10	chr19:37234000-37254400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
11	chr19:37234000-37262400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr19:37234800-37236600	Weak transcription	Fetal Heart	heart
13	chr19:37234800-37236600	Weak transcription	HSMM	muscle
14	chr19:37234800-37242600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr19:37235000-37253200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr19:37235000-37253800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
17	chr19:37235000-37256200	ZNF genes & repeats	Dnd41	blood
18	chr19:37235000-37257800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr19:37235000-37261200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr19:37235200-37235400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
21	chr19:37235200-37235400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr19:37235200-37235400	ZNF genes & repeats	HSMMtube	muscle
23	chr19:37235200-37235600	ZNF genes & repeats	Pancreas	Pancrea
24	chr19:37235200-37235800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
25	chr19:37235200-37237000	ZNF genes & repeats	Lung	lung
26	chr19:37235200-37237800	ZNF genes & repeats	Psoas Muscle	Psoas
27	chr19:37235200-37239600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
28	chr19:37235200-37242800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr19:37235200-37248400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
30	chr19:37235200-37252200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
31	chr19:37235200-37254200	ZNF genes & repeats	Fetal Brain Female	brain
32	chr19:37235200-37256000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr19:37235200-37256200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr19:37235200-37261600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr19:37235200-37262200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
36	chr19:37235200-37262400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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