Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25727136..25729248-chr10:25744729..25747128,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10508695	0.82[ASN][1000 genomes]
rs10508696	0.82[ASN][1000 genomes]
rs11014576	0.82[ASN][1000 genomes]
rs12415532	0.90[ASN][1000 genomes]
rs12766947	0.82[ASN][1000 genomes]
rs12778509	0.82[ASN][1000 genomes]
rs1360123	0.83[ASN][1000 genomes]
rs1361634	0.83[ASN][1000 genomes]
rs1590833	0.86[ASN][1000 genomes]
rs1592137	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1620326	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1773637	0.83[ASN][1000 genomes]
rs2480349	0.83[ASN][1000 genomes]
rs2987832	0.83[ASN][1000 genomes]
rs2987833	0.83[ASN][1000 genomes]
rs2987834	0.83[ASN][1000 genomes]
rs2987835	0.83[ASN][1000 genomes]
rs2987836	0.83[ASN][1000 genomes]
rs2987838	0.83[ASN][1000 genomes]
rs2987839	0.83[ASN][1000 genomes]
rs3005189	0.83[ASN][1000 genomes]
rs3005191	0.83[ASN][1000 genomes]
rs3005193	0.83[ASN][1000 genomes]
rs34535236	0.82[ASN][1000 genomes]
rs4545439	0.86[ASN][1000 genomes]
rs57048226	0.82[ASN][1000 genomes]
rs66516873	0.82[ASN][1000 genomes]
rs67290477	0.82[ASN][1000 genomes]
rs67616835	0.82[ASN][1000 genomes]
rs702980	0.83[ASN][1000 genomes]
rs7084979	0.82[ASN][1000 genomes]
rs7085111	0.82[ASN][1000 genomes]
rs824588	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs824607	0.83[ASN][1000 genomes]
rs824608	0.83[ASN][1000 genomes]
rs824609	0.83[ASN][1000 genomes]
rs824610	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25743600-25746400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:25745200-25755000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:25745400-25746400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr10:25745400-25746400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:25745400-25746800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr10:25745400-25754600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:25745600-25746600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr10:25745600-25746600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:25745800-25746200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:25745800-25746200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr10:25746000-25746400	Weak transcription	HUVEC	blood vessel

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