Variant report

Variant	rs3005189
Chromosome Location	chr10:25778948-25778949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25777451..25779468-chr10:25780530..25783047,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10508695	0.99[ASN][1000 genomes]
rs10508696	0.99[ASN][1000 genomes]
rs1069531	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11014576	0.99[ASN][1000 genomes]
rs12415532	0.90[ASN][1000 genomes]
rs12763436	0.95[ASN][1000 genomes]
rs12766947	0.99[ASN][1000 genomes]
rs12770449	0.95[ASN][1000 genomes]
rs12770880	0.95[ASN][1000 genomes]
rs12778509	0.99[ASN][1000 genomes]
rs1329255	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1329256	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1329257	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1360123	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361634	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410931	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1590833	0.86[ASN][1000 genomes]
rs1592137	0.89[ASN][1000 genomes]
rs1620326	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1773636	0.95[EUR][1000 genomes]
rs1773637	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1928365	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2211344	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2480348	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2480349	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2487819	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2987832	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987833	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987834	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987835	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987836	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987838	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987839	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987840	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3005181	0.83[ASN][1000 genomes]
rs3005182	0.83[ASN][1000 genomes]
rs3005185	0.81[AMR][1000 genomes]
rs3005187	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3005191	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3005193	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3005194	0.94[EUR][1000 genomes]
rs3123901	0.83[ASN][1000 genomes]
rs34535236	0.99[ASN][1000 genomes]
rs36146927	0.94[ASN][1000 genomes]
rs4408231	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4545439	0.86[ASN][1000 genomes]
rs4630196	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57048226	0.99[ASN][1000 genomes]
rs66516873	0.99[ASN][1000 genomes]
rs67290477	0.99[ASN][1000 genomes]
rs67616835	0.99[ASN][1000 genomes]
rs702977	0.88[EUR][1000 genomes]
rs702980	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075106	0.92[ASN][1000 genomes]
rs7084979	0.99[ASN][1000 genomes]
rs7085111	0.99[ASN][1000 genomes]
rs7086959	0.92[ASN][1000 genomes]
rs7089568	0.96[ASN][1000 genomes]
rs824588	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824589	0.88[EUR][1000 genomes]
rs824607	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824608	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824609	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824610	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25765800-25782800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:25775600-25782400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:25775800-25781200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:25776600-25780800	Weak transcription	HUVEC	blood vessel
5	chr10:25777200-25780800	Weak transcription	K562	blood
6	chr10:25777400-25780200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr10:25777400-25780800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr10:25777600-25780600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:25777800-25780200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:25777800-25780800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr10:25778000-25782000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:25778600-25781400	Weak transcription	Brain Anterior Caudate	brain
13	chr10:25778800-25780000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:25778800-25782400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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