Variant report

Variant	rs36146927
Chromosome Location	chr16:59801717-59801718
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10508695	0.95[ASN][1000 genomes]
rs10508696	0.95[ASN][1000 genomes]
rs1069531	0.85[ASN][1000 genomes]
rs11014576	0.95[ASN][1000 genomes]
rs12415532	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12763436	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12766947	0.95[ASN][1000 genomes]
rs12770449	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12770880	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12778509	0.95[ASN][1000 genomes]
rs1360123	0.94[ASN][1000 genomes]
rs1361634	0.94[ASN][1000 genomes]
rs1410931	0.90[ASN][1000 genomes]
rs1590833	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1592137	0.83[ASN][1000 genomes]
rs1620326	0.94[ASN][1000 genomes]
rs1773637	0.94[ASN][1000 genomes]
rs2480348	0.90[ASN][1000 genomes]
rs2480349	0.94[ASN][1000 genomes]
rs2487819	0.90[ASN][1000 genomes]
rs2987832	0.94[ASN][1000 genomes]
rs2987833	0.94[ASN][1000 genomes]
rs2987834	0.94[ASN][1000 genomes]
rs2987835	0.94[ASN][1000 genomes]
rs2987836	0.94[ASN][1000 genomes]
rs2987838	0.94[ASN][1000 genomes]
rs2987839	0.94[ASN][1000 genomes]
rs3005189	0.94[ASN][1000 genomes]
rs3005191	0.94[ASN][1000 genomes]
rs3005193	0.94[ASN][1000 genomes]
rs34535236	0.95[ASN][1000 genomes]
rs4545439	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57048226	0.95[ASN][1000 genomes]
rs66516873	0.95[ASN][1000 genomes]
rs67290477	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67616835	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs702980	0.94[ASN][1000 genomes]
rs7075106	0.99[ASN][1000 genomes]
rs7084979	0.95[ASN][1000 genomes]
rs7085111	0.95[ASN][1000 genomes]
rs7086959	0.99[ASN][1000 genomes]
rs7089568	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs824588	0.94[ASN][1000 genomes]
rs824607	0.94[ASN][1000 genomes]
rs824608	0.94[ASN][1000 genomes]
rs824609	0.94[ASN][1000 genomes]
rs824610	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906747	chr16:59385832-60172030	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv9451	chr16:59635240-60032841	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2422221	chr16:59638102-59851643	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv906749	chr16:59786020-59877306	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59788200-59811600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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