Variant report

Variant	rs1590833
Chromosome Location	chr10:25742717-25742718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25741449..25743230-chr10:25748378..25750112,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10508695	0.83[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10508696	0.83[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11014576	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12415532	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12763436	0.91[CEU][hapmap];0.89[CHB][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12766947	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12770449	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12770880	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12778509	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1329255	0.83[JPT][hapmap]
rs1329256	0.91[JPT][hapmap]
rs1329257	0.83[JPT][hapmap]
rs1360123	0.86[ASN][1000 genomes]
rs1361634	0.89[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs1410931	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs1592137	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1620326	0.89[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs1773637	0.89[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs1928365	0.84[JPT][hapmap]
rs2480348	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs2480349	0.86[ASN][1000 genomes]
rs2487819	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs2987832	0.88[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs2987833	0.88[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs2987834	0.86[ASN][1000 genomes]
rs2987835	0.86[ASN][1000 genomes]
rs2987836	0.86[ASN][1000 genomes]
rs2987838	0.89[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs2987839	0.86[ASN][1000 genomes]
rs3005182	0.83[JPT][hapmap]
rs3005189	0.86[ASN][1000 genomes]
rs3005191	0.89[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs3005193	0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs3123901	0.86[ASN][1000 genomes]
rs34535236	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36146927	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4545439	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57048226	0.87[ASN][1000 genomes]
rs66516873	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67290477	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67616835	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs702980	0.89[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs7075106	0.84[ASN][1000 genomes]
rs7084979	0.86[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7085111	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7086959	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7089568	0.85[ASN][1000 genomes]
rs824588	0.89[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs824607	0.89[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs824608	0.86[ASN][1000 genomes]
rs824609	0.89[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs824610	0.89[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25740600-25743800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr10:25740600-25744600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:25742200-25744800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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