Variant report

Variant	rs7084979
Chromosome Location	chr10:25766060-25766061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25764701..25766710-chr10:25768952..25770466,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10508695	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508696	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1069531	0.89[ASN][1000 genomes]
rs11014576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12415532	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12763436	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs12766947	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12770449	0.96[ASN][1000 genomes]
rs12770880	0.96[ASN][1000 genomes]
rs12778509	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329255	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs1329256	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1329257	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs1360123	0.99[ASN][1000 genomes]
rs1361634	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1410931	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs1590833	0.86[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1592137	1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs1620326	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1773637	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1928365	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2480348	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs2480349	0.99[ASN][1000 genomes]
rs2487819	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs2987832	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2987833	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2987834	0.99[ASN][1000 genomes]
rs2987835	0.99[ASN][1000 genomes]
rs2987836	0.99[ASN][1000 genomes]
rs2987838	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2987839	0.99[ASN][1000 genomes]
rs2987840	0.82[ASN][1000 genomes]
rs3005181	0.82[ASN][1000 genomes]
rs3005182	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs3005189	0.99[ASN][1000 genomes]
rs3005191	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3005193	0.82[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3123901	0.82[ASN][1000 genomes]
rs34535236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36146927	0.95[ASN][1000 genomes]
rs4545439	0.86[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs57048226	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66516873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67290477	1.00[ASN][1000 genomes]
rs67616835	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702980	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7075106	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7085111	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086959	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7089568	0.97[ASN][1000 genomes]
rs824588	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs824607	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs824608	0.99[ASN][1000 genomes]
rs824609	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs824610	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25756800-25775000	Weak transcription	K562	blood
2	chr10:25757200-25769600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:25765800-25770000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:25765800-25782800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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