Variant report

Variant	rs3005194
Chromosome Location	chr10:25768556-25768557
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25768082..25770377-chr10:25770941..25773456,2	MCF-7	breast:
2	chr10:25766789..25768735-chr10:25775251..25777861,2	K562	blood:
3	chr10:25766334..25768605-chr10:25771419..25774517,3	K562	blood:
4	chr10:25767235..25769916-chr10:25776361..25778648,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1069531	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1329255	0.81[EUR][1000 genomes]
rs1329256	0.81[EUR][1000 genomes]
rs1329257	0.82[EUR][1000 genomes]
rs1360123	0.98[EUR][1000 genomes]
rs1361634	0.85[EUR][1000 genomes]
rs1410931	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1773636	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1773637	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1928365	0.81[EUR][1000 genomes]
rs2211344	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2480348	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2480349	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2487819	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2987832	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs2987833	0.98[EUR][1000 genomes]
rs2987834	0.94[EUR][1000 genomes]
rs2987835	0.94[EUR][1000 genomes]
rs2987836	0.94[EUR][1000 genomes]
rs2987838	0.94[EUR][1000 genomes]
rs2987839	0.94[EUR][1000 genomes]
rs2987840	0.81[EUR][1000 genomes]
rs3005187	0.81[EUR][1000 genomes]
rs3005189	0.94[EUR][1000 genomes]
rs3005191	0.94[EUR][1000 genomes]
rs3005193	0.98[EUR][1000 genomes]
rs4408231	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4630196	0.87[EUR][1000 genomes]
rs702977	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs702980	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs824588	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs824589	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs824607	0.98[EUR][1000 genomes]
rs824608	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs824609	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs824610	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25756800-25775000	Weak transcription	K562	blood
2	chr10:25757200-25769600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:25765800-25770000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:25765800-25782800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:25768200-25769200	Enhancers	HUVEC	blood vessel
6	chr10:25768400-25769800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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