Variant report

Variant	rs1773636
Chromosome Location	chr10:25765688-25765689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25764701..25766710-chr10:25768952..25770466,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1069531	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1329255	0.82[EUR][1000 genomes]
rs1329256	0.82[EUR][1000 genomes]
rs1329257	0.81[YRI][hapmap];0.83[EUR][1000 genomes]
rs1360123	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1361634	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs1410931	0.95[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1592137	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1620326	0.91[CEU][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1773637	0.91[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1928365	0.82[EUR][1000 genomes]
rs2211344	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2480348	0.95[CEU][hapmap];0.97[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2480349	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2487819	0.91[CEU][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2987832	0.90[CEU][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs2987833	0.91[CEU][hapmap];0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs2987834	0.94[EUR][1000 genomes]
rs2987835	0.94[EUR][1000 genomes]
rs2987836	0.94[EUR][1000 genomes]
rs2987838	0.82[CEU][hapmap];0.95[EUR][1000 genomes]
rs2987839	0.95[EUR][1000 genomes]
rs2987840	0.82[EUR][1000 genomes]
rs3005181	0.80[EUR][1000 genomes]
rs3005185	0.80[EUR][1000 genomes]
rs3005187	0.82[EUR][1000 genomes]
rs3005189	0.95[EUR][1000 genomes]
rs3005191	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs3005193	0.91[CEU][hapmap];0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs3005194	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4408231	0.99[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs4630196	0.87[EUR][1000 genomes]
rs702977	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs702980	0.95[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs824588	0.95[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs824589	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs824607	0.86[CEU][hapmap];0.98[EUR][1000 genomes]
rs824608	0.95[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs824609	0.91[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs824610	0.91[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25756800-25775000	Weak transcription	K562	blood
2	chr10:25757200-25769600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:25765200-25765800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr10:25765200-25765800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr10:25765400-25765800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr10:25765600-25765800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:25765600-25766000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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