Variant report

Variant	rs4408231
Chromosome Location	chr10:25767625-25767626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25756226..25758820-chr10:25766240..25768212,2	K562	blood:
2	chr10:25766789..25768735-chr10:25775251..25777861,2	K562	blood:
3	chr10:25766334..25768605-chr10:25771419..25774517,3	K562	blood:
4	chr10:25767235..25769916-chr10:25776361..25778648,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1069531	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1329257	0.81[EUR][1000 genomes]
rs1360123	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1361634	0.84[EUR][1000 genomes]
rs1410931	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1592137	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1620326	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1773636	0.99[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1773637	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2211344	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2480348	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2480349	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2487819	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2987832	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2987833	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2987834	0.93[EUR][1000 genomes]
rs2987835	0.93[EUR][1000 genomes]
rs2987836	0.93[EUR][1000 genomes]
rs2987838	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2987839	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3005189	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3005191	0.93[EUR][1000 genomes]
rs3005193	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3005194	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4630196	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs702977	0.91[EUR][1000 genomes]
rs702980	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs824588	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs824589	0.89[EUR][1000 genomes]
rs824607	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs824608	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs824609	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs824610	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25756800-25775000	Weak transcription	K562	blood
2	chr10:25757200-25769600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:25765800-25770000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:25765800-25782800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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