Variant report
| Variant | rs702977 |
|---|---|
| Chromosome Location | chr10:25759959-25759960 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151025 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1069531 | 0.92[EUR][1000 genomes] |
| rs1360123 | 0.92[EUR][1000 genomes] |
| rs1361634 | 0.83[EUR][1000 genomes] |
| rs1410931 | 0.93[EUR][1000 genomes] |
| rs1773636 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1773637 | 0.93[EUR][1000 genomes] |
| rs2211344 | 0.85[EUR][1000 genomes] |
| rs2480348 | 0.93[EUR][1000 genomes] |
| rs2480349 | 0.93[EUR][1000 genomes] |
| rs2487819 | 0.94[EUR][1000 genomes] |
| rs2987832 | 0.93[EUR][1000 genomes] |
| rs2987833 | 0.92[EUR][1000 genomes] |
| rs2987834 | 0.89[EUR][1000 genomes] |
| rs2987835 | 0.89[EUR][1000 genomes] |
| rs2987836 | 0.89[EUR][1000 genomes] |
| rs2987838 | 0.88[EUR][1000 genomes] |
| rs2987839 | 0.88[EUR][1000 genomes] |
| rs3005189 | 0.88[EUR][1000 genomes] |
| rs3005191 | 0.89[EUR][1000 genomes] |
| rs3005193 | 0.92[EUR][1000 genomes] |
| rs3005194 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4408231 | 0.91[EUR][1000 genomes] |
| rs4630196 | 0.82[EUR][1000 genomes] |
| rs702980 | 0.92[EUR][1000 genomes] |
| rs824588 | 0.93[EUR][1000 genomes] |
| rs824589 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs824607 | 0.93[EUR][1000 genomes] |
| rs824608 | 0.92[EUR][1000 genomes] |
| rs824609 | 0.93[EUR][1000 genomes] |
| rs824610 | 0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3349863 | chr10:25614571-25946379 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:25756800-25775000 | Weak transcription | K562 | blood |
| 2 | chr10:25757200-25769600 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
