Variant report

Variant	rs4630196
Chromosome Location	chr10:25767730-25767731
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1069531	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1360123	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1410931	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1620326	0.86[AMR][1000 genomes]
rs1773636	0.87[EUR][1000 genomes]
rs1773637	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2211344	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2480348	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2480349	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2487819	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2987832	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2987833	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2987834	0.85[EUR][1000 genomes]
rs2987835	0.85[EUR][1000 genomes]
rs2987836	0.85[EUR][1000 genomes]
rs2987838	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2987839	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3005189	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3005191	0.85[EUR][1000 genomes]
rs3005193	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3005194	0.87[EUR][1000 genomes]
rs4408231	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs702977	0.82[EUR][1000 genomes]
rs702980	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs824588	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs824589	0.80[EUR][1000 genomes]
rs824607	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs824608	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs824609	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs824610	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25756800-25775000	Weak transcription	K562	blood
2	chr10:25757200-25769600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:25765800-25770000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:25765800-25782800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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