Variant report

Variant	rs824589
Chromosome Location	chr10:25753349-25753350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25747204..25749639-chr10:25751859..25754135,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1069531	0.94[EUR][1000 genomes]
rs1329255	0.82[CEU][hapmap]
rs1329256	0.80[CEU][hapmap]
rs1360123	0.91[EUR][1000 genomes]
rs1361634	0.96[CEU][hapmap];0.81[GIH][hapmap];0.86[EUR][1000 genomes]
rs1410931	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1620326	0.92[CEU][hapmap];0.93[GIH][hapmap];0.83[TSI][hapmap]
rs1773636	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1773637	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs1928365	0.81[CEU][hapmap]
rs2211344	0.85[EUR][1000 genomes]
rs2480348	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2480349	0.95[EUR][1000 genomes]
rs2487819	0.96[CEU][hapmap];0.91[GIH][hapmap];0.89[TSI][hapmap];0.94[EUR][1000 genomes]
rs2987832	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs2987833	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs2987834	0.87[EUR][1000 genomes]
rs2987835	0.87[EUR][1000 genomes]
rs2987836	0.87[EUR][1000 genomes]
rs2987838	0.88[CEU][hapmap];0.89[GIH][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs2987839	0.88[EUR][1000 genomes]
rs3005182	0.81[CEU][hapmap]
rs3005189	0.88[EUR][1000 genomes]
rs3005191	0.96[CEU][hapmap];0.81[GIH][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes]
rs3005193	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs3005194	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4408231	0.89[EUR][1000 genomes]
rs4630196	0.80[EUR][1000 genomes]
rs702977	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs702980	1.00[CEU][hapmap];0.93[GIH][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes]
rs824588	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs824607	0.96[CEU][hapmap];0.93[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs824608	0.92[EUR][1000 genomes]
rs824609	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs824610	0.96[CEU][hapmap];0.93[GIH][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs824589	BAMBI	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25745200-25755000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:25745400-25754600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:25746800-25754600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:25750200-25754800	Weak transcription	Placenta	Placenta

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