Variant report

Variant	rs313103
Chromosome Location	chr4:127554405-127554406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11727424	1.00[ASN][1000 genomes]
rs11730456	0.86[EUR][1000 genomes]
rs1355111	1.00[ASN][1000 genomes]
rs167506	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs170197	0.82[EUR][1000 genomes]
rs191112	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs313041	0.85[EUR][1000 genomes]
rs313043	0.98[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs313045	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs313059	0.83[CEU][hapmap]
rs313119	0.88[EUR][1000 genomes]
rs313124	0.94[CEU][hapmap]
rs313129	0.82[EUR][1000 genomes]
rs313130	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs313131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs313132	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs313134	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs313137	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs313138	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs313139	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs432446	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4444841	1.00[ASN][1000 genomes]
rs446747	0.92[EUR][1000 genomes]
rs4834125	1.00[ASN][1000 genomes]
rs60133914	1.00[ASN][1000 genomes]
rs62321712	1.00[ASN][1000 genomes]
rs62321713	1.00[ASN][1000 genomes]
rs62321714	1.00[ASN][1000 genomes]
rs62321715	1.00[ASN][1000 genomes]
rs62321722	1.00[ASN][1000 genomes]
rs62321723	1.00[ASN][1000 genomes]
rs62322676	1.00[ASN][1000 genomes]
rs62322678	1.00[ASN][1000 genomes]
rs62322679	1.00[ASN][1000 genomes]
rs62322680	1.00[ASN][1000 genomes]
rs62322683	1.00[ASN][1000 genomes]
rs62322684	1.00[ASN][1000 genomes]
rs62324762	1.00[ASN][1000 genomes]
rs6840519	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012833	chr4:127468474-127760933	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv537242	chr4:127468474-127760933	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv524850	chr4:127470903-127768849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1013854	chr4:127508969-127663216	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1009499	chr4:127532856-127659010	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv537243	chr4:127532856-127659010	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127552200-127557400	Weak transcription	Gastric	stomach
2	chr4:127554400-127564600	Weak transcription	K562	blood

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