Variant report
| Variant | rs4444841 |
|---|---|
| Chromosome Location | chr4:127412444-127412445 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:127404431..127407889-chr4:127409968..127412759,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11727424 | 1.00[ASN][1000 genomes] |
| rs1355111 | 1.00[ASN][1000 genomes] |
| rs167506 | 1.00[ASN][1000 genomes] |
| rs313103 | 1.00[ASN][1000 genomes] |
| rs313130 | 1.00[ASN][1000 genomes] |
| rs313131 | 1.00[ASN][1000 genomes] |
| rs313134 | 1.00[ASN][1000 genomes] |
| rs313137 | 1.00[ASN][1000 genomes] |
| rs313138 | 1.00[ASN][1000 genomes] |
| rs432446 | 1.00[ASN][1000 genomes] |
| rs4410545 | 0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs4440236 | 0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs4456971 | 0.87[AFR][1000 genomes] |
| rs4456972 | 0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4624666 | 0.89[AFR][1000 genomes] |
| rs4834125 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60133914 | 1.00[ASN][1000 genomes] |
| rs62321712 | 1.00[ASN][1000 genomes] |
| rs62321713 | 1.00[ASN][1000 genomes] |
| rs62321714 | 1.00[ASN][1000 genomes] |
| rs62321715 | 1.00[ASN][1000 genomes] |
| rs62321722 | 1.00[ASN][1000 genomes] |
| rs62321723 | 1.00[ASN][1000 genomes] |
| rs62322676 | 1.00[ASN][1000 genomes] |
| rs62322678 | 1.00[ASN][1000 genomes] |
| rs62322679 | 1.00[ASN][1000 genomes] |
| rs62322680 | 1.00[ASN][1000 genomes] |
| rs62322683 | 1.00[ASN][1000 genomes] |
| rs62322684 | 1.00[ASN][1000 genomes] |
| rs62324762 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879906 | chr4:127354073-127414252 | Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 2 | nsv595385 | chr4:127383473-127451806 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:127392200-127413200 | Weak transcription | K562 | blood |
