Variant report

Variant	rs3134694
Chromosome Location	chr6:55060638-55060639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54710275..54712638-chr6:55059512..55062485,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10498801	0.91[ASN][1000 genomes]
rs10948893	0.93[ASN][1000 genomes]
rs10948894	0.91[ASN][1000 genomes]
rs12526414	0.92[ASN][1000 genomes]
rs13343017	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2998995	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3006854	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3122148	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3122149	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3122151	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3122152	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134689	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3134690	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134691	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134692	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3134696	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3134699	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3134700	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3134701	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3134703	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3134708	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4236127	0.93[ASN][1000 genomes]
rs55873439	0.87[ASN][1000 genomes]
rs58828550	0.92[ASN][1000 genomes]
rs59420753	0.93[ASN][1000 genomes]
rs59867521	0.92[ASN][1000 genomes]
rs60304167	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs60550710	0.84[ASN][1000 genomes]
rs62418310	0.84[ASN][1000 genomes]
rs62418311	0.85[ASN][1000 genomes]
rs6937705	0.89[ASN][1000 genomes]
rs6937878	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6939376	0.91[ASN][1000 genomes]
rs73434718	0.93[ASN][1000 genomes]
rs7758861	0.82[ASN][1000 genomes]
rs7775741	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016461	chr6:55038131-55129663	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3366409	chr6:55057893-55061191	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55054200-55062000	Weak transcription	Stomach Mucosa	stomach
2	chr6:55057800-55063200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:55060200-55063200	Weak transcription	Hela-S3	cervix

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