Variant report

Variant	rs2998995
Chromosome Location	chr6:55054596-55054597
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10498801	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10948893	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10948894	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12526414	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12663056	0.84[AMR][1000 genomes]
rs13343017	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3006854	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3122148	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3122149	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3122151	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3122152	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3122153	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3134689	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3134690	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3134691	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3134692	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3134694	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3134696	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3134699	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3134700	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3134701	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3134703	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3134708	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4236127	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs55873439	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58828550	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59420753	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59867521	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60304167	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60550710	0.94[ASN][1000 genomes]
rs62418310	0.94[ASN][1000 genomes]
rs62418311	0.95[ASN][1000 genomes]
rs6927478	0.89[ASN][1000 genomes]
rs6937705	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6937878	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6939376	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73434718	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7758861	0.92[ASN][1000 genomes]
rs7775741	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7775745	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016461	chr6:55038131-55129663	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55054200-55062000	Weak transcription	Stomach Mucosa	stomach

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