Variant report

Variant	rs320418
Chromosome Location	chr1:213706166-213706167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17704470	0.91[EUR][1000 genomes]
rs320383	0.90[EUR][1000 genomes]
rs320389	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs320417	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs320419	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs320420	0.83[EUR][1000 genomes]
rs320423	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs320425	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6659752	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213704000-213707000	Enhancers	Brain Germinal Matrix	brain
2	chr1:213704200-213707400	Weak transcription	Right Atrium	heart
3	chr1:213705400-213706800	Weak transcription	Fetal Heart	heart
4	chr1:213705600-213709000	Weak transcription	Pancreas	Pancrea
5	chr1:213705800-213706400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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