Variant report

Variant	rs320425
Chromosome Location	chr1:213702665-213702666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17704470	0.88[EUR][1000 genomes]
rs320383	0.93[EUR][1000 genomes]
rs320387	0.86[AFR][1000 genomes]
rs320389	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs320417	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs320418	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs320419	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs320420	0.82[EUR][1000 genomes]
rs320423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6659752	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213698000-213703800	Weak transcription	Right Ventricle	heart
2	chr1:213700000-213703600	Weak transcription	Fetal Heart	heart
3	chr1:213700400-213703600	Weak transcription	Fetal Lung	lung
4	chr1:213701800-213703200	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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