Variant report

Variant	rs320419
Chromosome Location	chr1:213705582-213705583
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17704470	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs320383	0.93[EUR][1000 genomes]
rs320389	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs320417	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs320418	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs320420	0.82[EUR][1000 genomes]
rs320423	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs320425	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6659752	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213703400-213705800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:213704000-213707000	Enhancers	Brain Germinal Matrix	brain
3	chr1:213704200-213707400	Weak transcription	Right Atrium	heart
4	chr1:213705000-213705600	Enhancers	Pancreas	Pancrea
5	chr1:213705200-213705800	Enhancers	Fetal Brain Male	brain
6	chr1:213705400-213706800	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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