Variant report

Variant	rs320604
Chromosome Location	chr5:41300718-41300719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs161088	1.00[ASN][1000 genomes]
rs1613321	1.00[ASN][1000 genomes]
rs178466	1.00[ASN][1000 genomes]
rs1817334	1.00[ASN][1000 genomes]
rs2445889	1.00[ASN][1000 genomes]
rs318029	1.00[ASN][1000 genomes]
rs318030	1.00[ASN][1000 genomes]
rs318031	1.00[ASN][1000 genomes]
rs318038	1.00[ASN][1000 genomes]
rs319002	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs319003	1.00[ASN][1000 genomes]
rs319004	1.00[ASN][1000 genomes]
rs319007	1.00[ASN][1000 genomes]
rs319009	1.00[ASN][1000 genomes]
rs453636	1.00[ASN][1000 genomes]
rs62360428	1.00[ASN][1000 genomes]
rs62360566	1.00[ASN][1000 genomes]
rs62360568	1.00[ASN][1000 genomes]
rs62360569	1.00[ASN][1000 genomes]
rs638701	1.00[ASN][1000 genomes]
rs897807	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41299400-41304800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:41300000-41307000	Weak transcription	Aorta	Aorta
3	chr5:41300400-41301000	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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