Variant report

Variant	rs178466
Chromosome Location	chr5:41418919-41418920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13155537	0.96[EUR][1000 genomes]
rs161088	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1613321	1.00[ASN][1000 genomes]
rs1817334	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2445889	1.00[ASN][1000 genomes]
rs318029	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs318030	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs318031	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs318035	0.97[EUR][1000 genomes]
rs318036	1.00[EUR][1000 genomes]
rs318038	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs319002	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs319003	1.00[ASN][1000 genomes]
rs319004	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs319007	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs319009	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs319011	0.96[EUR][1000 genomes]
rs319012	0.96[EUR][1000 genomes]
rs320604	1.00[ASN][1000 genomes]
rs453636	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360428	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360566	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360568	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360569	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360573	0.96[EUR][1000 genomes]
rs638701	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs897807	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851387	chr5:41336050-41423631	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1024631	chr5:41341979-41427953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41413000-41419000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:41413200-41419400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr5:41413600-41425400	Weak transcription	Ovary	ovary
4	chr5:41414400-41419800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:41414400-41420600	Enhancers	Fetal Heart	heart
6	chr5:41416400-41419000	Enhancers	NHDF-Ad	bronchial
7	chr5:41417600-41419600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:41417800-41419000	Enhancers	NHLF	lung
9	chr5:41417800-41419200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:41417800-41419200	Enhancers	Right Atrium	heart
11	chr5:41417800-41419400	Enhancers	NH-A	brain
12	chr5:41418000-41419200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:41418000-41419200	Enhancers	Osteobl	bone
14	chr5:41418000-41433000	Weak transcription	Left Ventricle	heart
15	chr5:41418200-41419600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr5:41418400-41419000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr5:41418400-41419000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:41418400-41419200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr5:41418400-41419200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:41418400-41419400	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr5:41418400-41419400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr5:41418400-41419400	Flanking Active TSS	A549	lung
23	chr5:41418400-41419400	Enhancers	HMEC	breast
24	chr5:41418400-41419600	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr5:41418600-41419200	Enhancers	H1 Cell Line	embryonic stem cell
26	chr5:41418600-41419200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr5:41418600-41419600	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr5:41418600-41419600	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr5:41418800-41419200	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr5:41418800-41419400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr5:41418800-41419400	Enhancers	Hela-S3	cervix
32	chr5:41418800-41419600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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