Variant report

Variant	rs62360428
Chromosome Location	chr5:41421362-41421363
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:41415903..41418047-chr5:41420031..41421583,2	K562	blood:
2	chr5:41415119..41417531-chr5:41419550..41421583,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13155537	0.96[EUR][1000 genomes]
rs161088	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1613321	1.00[ASN][1000 genomes]
rs178466	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1817334	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2445889	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs318029	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs318030	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs318031	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs318035	0.97[EUR][1000 genomes]
rs318036	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs318038	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs319002	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs319003	1.00[ASN][1000 genomes]
rs319004	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs319007	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs319009	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs319011	0.96[EUR][1000 genomes]
rs319012	0.96[EUR][1000 genomes]
rs320604	1.00[ASN][1000 genomes]
rs453636	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360566	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360568	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360569	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360573	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs638701	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs897807	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851387	chr5:41336050-41423631	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1024631	chr5:41341979-41427953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41413600-41425400	Weak transcription	Ovary	ovary
2	chr5:41418000-41433000	Weak transcription	Left Ventricle	heart
3	chr5:41419200-41433200	Weak transcription	Pancreas	Pancrea
4	chr5:41419400-41427800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:41421200-41421600	Enhancers	Fetal Heart	heart

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