Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13155537	0.92[AFR][1000 genomes]
rs161088	1.00[ASN][1000 genomes]
rs178466	1.00[ASN][1000 genomes]
rs1817334	0.85[CEU][hapmap];1.00[ASN][1000 genomes]
rs2445889	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs318029	0.85[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs318030	0.80[CEU][hapmap];1.00[ASN][1000 genomes]
rs318031	1.00[ASN][1000 genomes]
rs318035	0.93[ASW][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs318038	1.00[GIH][hapmap];0.86[TSI][hapmap];1.00[ASN][1000 genomes]
rs319002	1.00[ASN][1000 genomes]
rs319003	1.00[ASN][1000 genomes]
rs319004	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs319005	0.82[YRI][hapmap]
rs319007	1.00[ASN][1000 genomes]
rs319009	1.00[ASN][1000 genomes]
rs319011	0.93[ASW][hapmap];0.85[CEU][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs319012	0.93[ASW][hapmap];0.85[CEU][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs320604	1.00[ASN][1000 genomes]
rs320615	1.00[CHD][hapmap]
rs453636	1.00[ASN][1000 genomes]
rs62360428	1.00[ASN][1000 genomes]
rs62360566	1.00[ASN][1000 genomes]
rs62360568	1.00[ASN][1000 genomes]
rs62360569	1.00[ASN][1000 genomes]
rs638701	1.00[ASN][1000 genomes]
rs897807	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851387	chr5:41336050-41423631	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1024631	chr5:41341979-41427953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1613321	OXCT1	cis	lymphoblastoid	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41413600-41425400	Weak transcription	Ovary	ovary
2	chr5:41418000-41433000	Weak transcription	Left Ventricle	heart
3	chr5:41419200-41433200	Weak transcription	Pancreas	Pancrea
4	chr5:41419400-41427800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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