Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs161088	0.96[EUR][1000 genomes]
rs1613321	0.92[AFR][1000 genomes]
rs178466	0.96[EUR][1000 genomes]
rs1817334	1.00[EUR][1000 genomes]
rs318029	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs318030	1.00[EUR][1000 genomes]
rs318031	0.99[EUR][1000 genomes]
rs318035	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs318036	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs318038	0.96[EUR][1000 genomes]
rs319002	0.96[EUR][1000 genomes]
rs319004	1.00[EUR][1000 genomes]
rs319007	0.96[EUR][1000 genomes]
rs319009	0.96[EUR][1000 genomes]
rs319011	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs319012	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs453636	0.93[EUR][1000 genomes]
rs62360428	0.96[EUR][1000 genomes]
rs62360566	1.00[EUR][1000 genomes]
rs62360568	1.00[EUR][1000 genomes]
rs62360569	1.00[EUR][1000 genomes]
rs62360573	1.00[EUR][1000 genomes]
rs638701	0.96[EUR][1000 genomes]
rs897807	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1851387	chr5:41336050-41423631	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1024631	chr5:41341979-41427953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41372000-41389400	Weak transcription	Ovary	ovary
2	chr5:41375200-41390800	Weak transcription	Right Ventricle	heart
3	chr5:41382600-41392400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:41383200-41390800	Weak transcription	Left Ventricle	heart
5	chr5:41387400-41390800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:41387600-41388600	Weak transcription	Fetal Heart	heart
7	chr5:41388000-41388600	Enhancers	Fetal Intestine Small	intestine

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