Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13155537	1.00[EUR][1000 genomes]
rs161088	0.96[EUR][1000 genomes]
rs178466	0.96[EUR][1000 genomes]
rs1817334	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2445889	0.81[AFR][1000 genomes]
rs318029	1.00[EUR][1000 genomes]
rs318030	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs318031	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs318035	0.93[EUR][1000 genomes]
rs318036	0.96[EUR][1000 genomes]
rs318038	0.96[EUR][1000 genomes]
rs319002	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs319004	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs319007	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs319009	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs319011	1.00[EUR][1000 genomes]
rs319012	1.00[EUR][1000 genomes]
rs453636	0.93[EUR][1000 genomes]
rs62360428	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs62360566	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62360568	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62360569	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs638701	0.96[EUR][1000 genomes]
rs897807	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851387	chr5:41336050-41423631	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1024631	chr5:41341979-41427953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41389800-41409000	Weak transcription	Ovary	ovary
2	chr5:41392400-41409400	Weak transcription	Right Ventricle	heart
3	chr5:41392600-41408400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:41397600-41406600	Weak transcription	Left Ventricle	heart
5	chr5:41400800-41406200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:41401800-41404000	Weak transcription	Fetal Heart	heart
7	chr5:41402800-41406000	Enhancers	A549	lung
8	chr5:41403400-41404800	Weak transcription	Fetal Intestine Large	intestine

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