Variant report

Variant	rs32653
Chromosome Location	chr5:118704643-118704644
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:118703898..118705619-chr5:118707402..118710351,2	MCF-7	breast:
2	chr5:118697330..118698986-chr5:118703713..118705854,2	K562	blood:
3	chr5:118702494..118705018-chr5:118721326..118723316,2	K562	blood:
4	chr5:118702891..118704960-chr5:118704985..118706852,2	K562	blood:
5	chr5:118671639..118673344-chr5:118704484..118706218,2	MCF-7	breast:
6	chr5:118694003..118695514-chr5:118702922..118705172,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10059175	0.96[YRI][hapmap]
rs10477585	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1112247	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13155880	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1396609	0.96[YRI][hapmap]
rs17145265	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs250298	0.88[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs250299	0.89[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs250308	0.91[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs32655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs32657	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs32658	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3797339	0.98[AFR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3797341	0.86[AFR][1000 genomes]
rs3797343	0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs3813308	0.87[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3920174	0.96[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs408095	0.86[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes]
rs4895372	0.92[CEU][hapmap]
rs67328001	0.85[AFR][1000 genomes]
rs6863311	0.88[AFR][1000 genomes]
rs6864305	0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs6869512	0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs6870253	0.84[YRI][hapmap];0.82[AFR][1000 genomes]
rs6876224	0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs6877025	0.91[YRI][hapmap];0.88[AFR][1000 genomes]
rs6882237	0.88[AFR][1000 genomes]
rs6891084	0.82[AFR][1000 genomes]
rs6896277	0.83[AFR][1000 genomes]
rs6896553	0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs6896559	0.83[AFR][1000 genomes]
rs6897359	0.82[AFR][1000 genomes]
rs7707470	0.86[AFR][1000 genomes]
rs996934	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118692000-118707200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr5:118693400-118706800	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr5:118694000-118707200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr5:118695200-118706800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr5:118699800-118705400	Weak transcription	Thymus	Thymus
6	chr5:118700200-118713800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:118700400-118705000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr5:118700400-118705600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr5:118700800-118705000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr5:118701600-118704800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr5:118702200-118705800	Enhancers	K562	blood
12	chr5:118702200-118710200	Weak transcription	Fetal Lung	lung
13	chr5:118702400-118706800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:118702600-118705000	Enhancers	Primary hematopoietic stem cells	blood
15	chr5:118702600-118705000	Weak transcription	Small Intestine	intestine
16	chr5:118702600-118705400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr5:118702800-118704800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr5:118702800-118704800	Enhancers	Fetal Thymus	thymus
19	chr5:118702800-118705000	Enhancers	Primary B cells from peripheral blood	blood
20	chr5:118702800-118705000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr5:118702800-118705200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr5:118702800-118705200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr5:118702800-118705200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:118702800-118705400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr5:118702800-118705400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr5:118702800-118705400	Weak transcription	Lung	lung
27	chr5:118702800-118705400	Weak transcription	Pancreas	Pancrea
28	chr5:118702800-118706200	Weak transcription	Esophagus	oesophagus
29	chr5:118702800-118707400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr5:118702800-118710800	Weak transcription	Left Ventricle	heart
31	chr5:118702800-118713400	Weak transcription	Aorta	Aorta
32	chr5:118702800-118713400	Weak transcription	Fetal Stomach	stomach
33	chr5:118702800-118713600	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr5:118702800-118714400	Weak transcription	Placenta	Placenta
35	chr5:118702800-118715000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr5:118702800-118715400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr5:118702800-118720000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr5:118702800-118720800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr5:118702800-118722400	Weak transcription	Spleen	Spleen
40	chr5:118702800-118723800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr5:118702800-118736000	Weak transcription	Fetal Muscle Leg	muscle
42	chr5:118703000-118705400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr5:118703000-118713000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr5:118703200-118705400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr5:118703200-118705400	Weak transcription	A549	lung
46	chr5:118703200-118706800	Weak transcription	NHLF	lung
47	chr5:118703600-118705800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
48	chr5:118703800-118705600	Enhancers	Primary T cells fromperipheralblood	blood
49	chr5:118703800-118706000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr5:118703800-118714000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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