Variant report

Variant	rs6882237
Chromosome Location	chr5:118693287-118693288
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118692399..118693980-chr5:118717576..118719923,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10059175	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10477585	0.88[AFR][1000 genomes]
rs10519585	0.81[ASN][1000 genomes]
rs11957102	0.89[ASN][1000 genomes]
rs13155880	0.88[AFR][1000 genomes]
rs1396609	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs17145230	0.86[ASN][1000 genomes]
rs17145248	0.88[ASN][1000 genomes]
rs17145265	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17385413	0.89[ASN][1000 genomes]
rs250298	0.86[AFR][1000 genomes]
rs250299	0.86[AFR][1000 genomes]
rs32653	0.88[AFR][1000 genomes]
rs32655	0.88[AFR][1000 genomes]
rs32657	0.88[AFR][1000 genomes]
rs32658	0.87[AFR][1000 genomes]
rs3797339	0.86[AFR][1000 genomes]
rs3797341	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3797342	0.88[ASN][1000 genomes]
rs3797343	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs3813308	0.85[AFR][1000 genomes]
rs3920174	0.84[AFR][1000 genomes]
rs408095	0.82[AFR][1000 genomes]
rs67328001	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6863311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6864305	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6869512	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6870253	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6876224	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6877025	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6878879	0.86[ASN][1000 genomes]
rs6883657	0.88[ASN][1000 genomes]
rs6891084	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6896277	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6896553	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6896559	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6897359	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7703408	0.89[ASN][1000 genomes]
rs7707470	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7731632	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs996934	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv16366	chr5:118692052-118702846	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118671200-118695400	Weak transcription	A549	lung
2	chr5:118682600-118693600	Weak transcription	Dnd41	blood
3	chr5:118690600-118693400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
4	chr5:118690600-118700400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
5	chr5:118690800-118693800	Active TSS	Rectal Smooth Muscle	rectum
6	chr5:118691000-118693400	Active TSS	HSMMtube	muscle
7	chr5:118691200-118693400	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr5:118691200-118694200	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr5:118691200-118694200	Active TSS	GM12878-XiMat	blood
10	chr5:118691400-118693400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:118691400-118693400	Active TSS	NHDF-Ad	bronchial
12	chr5:118691400-118693400	Active TSS	NHLF	lung
13	chr5:118691400-118693800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:118691400-118694400	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr5:118691400-118694400	Active TSS	Stomach Smooth Muscle	stomach
16	chr5:118691800-118693400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
17	chr5:118691800-118693400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr5:118691800-118695400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
19	chr5:118691800-118700400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
20	chr5:118692000-118693400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
21	chr5:118692000-118693400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
22	chr5:118692000-118693400	Flanking Active TSS	HMEC	breast
23	chr5:118692000-118693800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr5:118692000-118707200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr5:118692200-118694400	Weak transcription	Pancreas	Pancrea
26	chr5:118692200-118694400	Weak transcription	Spleen	Spleen
27	chr5:118692200-118694600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr5:118692200-118696800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr5:118692400-118693400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
30	chr5:118692400-118693400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
31	chr5:118692400-118693400	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr5:118692400-118693400	Flanking Active TSS	Fetal Lung	lung
33	chr5:118692400-118694400	Flanking Active TSS	Primary B cells from cord blood	blood
34	chr5:118692400-118694400	Weak transcription	Esophagus	oesophagus
35	chr5:118692400-118694800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr5:118692400-118695000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
37	chr5:118692400-118695200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr5:118692400-118696200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr5:118692600-118693400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr5:118692600-118693400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr5:118692600-118693400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr5:118692600-118693400	Flanking Active TSS	Osteobl	bone
43	chr5:118692600-118693600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr5:118692600-118695000	Enhancers	H9 Cell Line	embryonic stem cell
45	chr5:118692600-118695000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr5:118692600-118695600	Enhancers	Primary T cells from cord blood	blood
47	chr5:118692600-118696000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr5:118692600-118697200	Enhancers	Primary hematopoietic stem cells	blood
49	chr5:118692800-118693400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
50	chr5:118692800-118693400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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