Variant report

Variant	rs32657
Chromosome Location	chr5:118703861-118703862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:118697330..118698986-chr5:118703713..118705854,2	K562	blood:
2	chr5:118694003..118697109-chr5:118701584..118704422,3	K562	blood:
3	chr5:118695609..118697325-chr5:118702023..118704642,2	K562	blood:
4	chr5:118702494..118705018-chr5:118721326..118723316,2	K562	blood:
5	chr5:118702891..118704960-chr5:118704985..118706852,2	K562	blood:
6	chr5:118696081..118700363-chr5:118700434..118704100,5	MCF-7	breast:
7	chr5:118694003..118695514-chr5:118702922..118705172,2	K562	blood:

No data

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10477585	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1112247	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13155880	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17145265	0.86[AFR][1000 genomes]
rs250298	0.98[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs250299	0.98[AFR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs250308	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs32653	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs32655	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs32658	0.99[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3797339	0.98[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3797341	0.86[AFR][1000 genomes]
rs3797343	0.86[AFR][1000 genomes]
rs3813308	0.97[AFR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3920174	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs408095	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67328001	0.85[AFR][1000 genomes]
rs6863311	0.88[AFR][1000 genomes]
rs6864305	0.82[AFR][1000 genomes]
rs6869512	0.85[AFR][1000 genomes]
rs6870253	0.82[AFR][1000 genomes]
rs6876224	0.83[AFR][1000 genomes]
rs6877025	0.88[AFR][1000 genomes]
rs6882237	0.88[AFR][1000 genomes]
rs6891084	0.82[AFR][1000 genomes]
rs6896277	0.83[AFR][1000 genomes]
rs6896553	0.83[AFR][1000 genomes]
rs6896559	0.83[AFR][1000 genomes]
rs6897359	0.82[AFR][1000 genomes]
rs7707470	0.86[AFR][1000 genomes]
rs996934	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118692000-118707200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr5:118693400-118706800	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr5:118694000-118707200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr5:118694400-118704600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:118695200-118706800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:118696000-118704200	Weak transcription	Fetal Intestine Small	intestine
7	chr5:118696800-118704400	Enhancers	HMEC	breast
8	chr5:118699600-118704000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr5:118699800-118705400	Weak transcription	Thymus	Thymus
10	chr5:118700200-118704000	Enhancers	NHEK	skin
11	chr5:118700200-118713800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:118700400-118705000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr5:118700400-118705600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr5:118700800-118704200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr5:118700800-118704400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:118700800-118705000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:118701000-118704200	Enhancers	Fetal Heart	heart
18	chr5:118701000-118704600	Enhancers	Adipose Nuclei	Adipose
19	chr5:118701200-118704000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:118701400-118704600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr5:118701600-118704000	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr5:118701600-118704000	Enhancers	NHDF-Ad	bronchial
23	chr5:118701600-118704200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:118701600-118704200	Enhancers	Dnd41	blood
25	chr5:118701600-118704800	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr5:118702000-118704000	Enhancers	Fetal Kidney	kidney
27	chr5:118702200-118705800	Enhancers	K562	blood
28	chr5:118702200-118710200	Weak transcription	Fetal Lung	lung
29	chr5:118702400-118706800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr5:118702600-118704400	Enhancers	Hela-S3	cervix
31	chr5:118702600-118704600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr5:118702600-118705000	Enhancers	Primary hematopoietic stem cells	blood
33	chr5:118702600-118705000	Weak transcription	Small Intestine	intestine
34	chr5:118702600-118705400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr5:118702800-118704000	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr5:118702800-118704800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr5:118702800-118704800	Enhancers	Fetal Thymus	thymus
38	chr5:118702800-118705000	Enhancers	Primary B cells from peripheral blood	blood
39	chr5:118702800-118705000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr5:118702800-118705200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr5:118702800-118705200	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr5:118702800-118705200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr5:118702800-118705400	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr5:118702800-118705400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr5:118702800-118705400	Weak transcription	Lung	lung
46	chr5:118702800-118705400	Weak transcription	Pancreas	Pancrea
47	chr5:118702800-118706200	Weak transcription	Esophagus	oesophagus
48	chr5:118702800-118707400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr5:118702800-118710800	Weak transcription	Left Ventricle	heart
50	chr5:118702800-118713400	Weak transcription	Aorta	Aorta

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