Variant report

Variant	rs32658
Chromosome Location	chr5:118703662-118703663
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:118694003..118697109-chr5:118701584..118704422,3	K562	blood:
2	chr5:118695609..118697325-chr5:118702023..118704642,2	K562	blood:
3	chr5:118702494..118705018-chr5:118721326..118723316,2	K562	blood:
4	chr5:118702891..118704960-chr5:118704985..118706852,2	K562	blood:
5	chr5:118696081..118700363-chr5:118700434..118704100,5	MCF-7	breast:
6	chr5:118694003..118695514-chr5:118702922..118705172,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10059175	0.96[YRI][hapmap]
rs10477585	0.99[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1112247	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.94[LWK][hapmap];0.92[MKK][hapmap];0.89[TSI][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11949608	0.82[CHB][hapmap]
rs13155880	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1396609	0.89[LWK][hapmap];0.82[MKK][hapmap];0.96[YRI][hapmap]
rs17145265	0.92[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs250298	0.88[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs250299	0.88[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs250308	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs26180	0.81[CHB][hapmap]
rs32653	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs32655	0.99[AFR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs32657	0.99[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3797339	0.97[AFR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3797341	0.85[AFR][1000 genomes]
rs3797343	0.81[MKK][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs3813308	1.00[ASW][hapmap];0.87[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];0.92[LWK][hapmap];0.97[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3920174	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs408095	0.88[ASW][hapmap];0.83[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.94[LWK][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs461108	0.82[GIH][hapmap]
rs4895372	0.92[CEU][hapmap]
rs67328001	0.84[AFR][1000 genomes]
rs6863311	0.87[AFR][1000 genomes]
rs6864305	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs6869512	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs6870253	0.83[YRI][hapmap];0.81[AFR][1000 genomes]
rs6875595	0.82[GIH][hapmap]
rs6876224	0.87[LWK][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs6877025	0.89[LWK][hapmap];0.86[MKK][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes]
rs6882237	0.87[AFR][1000 genomes]
rs6891084	0.81[AFR][1000 genomes]
rs6896277	0.82[AFR][1000 genomes]
rs6896553	0.89[LWK][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs6896559	0.82[AFR][1000 genomes]
rs6897359	0.81[AFR][1000 genomes]
rs7707470	0.85[AFR][1000 genomes]
rs7721602	0.80[GIH][hapmap]
rs996934	0.99[AFR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118692000-118707200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr5:118693400-118706800	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr5:118694000-118707200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr5:118694400-118704600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:118694800-118703800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:118695200-118706800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr5:118696000-118704200	Weak transcription	Fetal Intestine Small	intestine
8	chr5:118696400-118703800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr5:118696800-118704400	Enhancers	HMEC	breast
10	chr5:118699600-118704000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr5:118699800-118705400	Weak transcription	Thymus	Thymus
12	chr5:118700200-118704000	Enhancers	NHEK	skin
13	chr5:118700200-118713800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr5:118700400-118705000	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr5:118700400-118705600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr5:118700800-118704200	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr5:118700800-118704400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:118700800-118705000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr5:118701000-118704200	Enhancers	Fetal Heart	heart
20	chr5:118701000-118704600	Enhancers	Adipose Nuclei	Adipose
21	chr5:118701200-118704000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr5:118701400-118704600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr5:118701600-118703800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr5:118701600-118704000	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr5:118701600-118704000	Enhancers	NHDF-Ad	bronchial
26	chr5:118701600-118704200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr5:118701600-118704200	Enhancers	Dnd41	blood
28	chr5:118701600-118704800	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr5:118702000-118704000	Enhancers	Fetal Kidney	kidney
30	chr5:118702200-118705800	Enhancers	K562	blood
31	chr5:118702200-118710200	Weak transcription	Fetal Lung	lung
32	chr5:118702400-118706800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr5:118702600-118704400	Enhancers	Hela-S3	cervix
34	chr5:118702600-118704600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr5:118702600-118705000	Enhancers	Primary hematopoietic stem cells	blood
36	chr5:118702600-118705000	Weak transcription	Small Intestine	intestine
37	chr5:118702600-118705400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr5:118702800-118703800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr5:118702800-118703800	Enhancers	Primary T cells from cord blood	blood
40	chr5:118702800-118703800	Weak transcription	Liver	Liver
41	chr5:118702800-118703800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr5:118702800-118704000	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr5:118702800-118704800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr5:118702800-118704800	Enhancers	Fetal Thymus	thymus
45	chr5:118702800-118705000	Enhancers	Primary B cells from peripheral blood	blood
46	chr5:118702800-118705000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
47	chr5:118702800-118705200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr5:118702800-118705200	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr5:118702800-118705200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr5:118702800-118705400	Weak transcription	H1 Cell Line	embryonic stem cell

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