Variant report

Variant	rs34025186
Chromosome Location	chr15:75296982-75296983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12899456	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs12902887	0.87[AMR][1000 genomes]
rs12905058	0.92[AMR][1000 genomes]
rs12905176	0.89[AMR][1000 genomes]
rs12905302	0.80[AMR][1000 genomes]
rs12906126	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12906783	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12908596	0.84[AMR][1000 genomes]
rs12908919	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12910578	0.82[AMR][1000 genomes]
rs12911696	0.87[AMR][1000 genomes]
rs16973563	0.89[AMR][1000 genomes]
rs17336944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1822324	0.89[AMR][1000 genomes]
rs2304900	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34073905	0.87[AFR][1000 genomes]
rs34142677	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34183160	0.89[AMR][1000 genomes]
rs34227381	0.89[AMR][1000 genomes]
rs34268734	0.89[AMR][1000 genomes]
rs34293738	0.83[AMR][1000 genomes]
rs34359839	0.83[AMR][1000 genomes]
rs34767908	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34820454	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34911644	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35056361	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35205508	0.89[AMR][1000 genomes]
rs35373072	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35375675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35396991	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs35406858	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35933822	0.83[AMR][1000 genomes]
rs71401669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71401671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71401672	0.89[AMR][1000 genomes]
rs71401673	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs71401675	0.82[AMR][1000 genomes]
rs71401676	0.80[AMR][1000 genomes]
rs71401677	0.82[AMR][1000 genomes]
rs71434254	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8038911	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv542435	chr15:75271788-75321117	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75289000-75315800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:75289400-75299600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr15:75289400-75305000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr15:75289400-75305000	Weak transcription	Brain Substantia Nigra	brain
5	chr15:75289400-75305600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:75289400-75315400	Weak transcription	Fetal Kidney	kidney
7	chr15:75289600-75304000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:75289600-75305400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr15:75289800-75298800	Weak transcription	Right Atrium	heart
10	chr15:75289800-75299200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr15:75289800-75299600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:75289800-75304000	Weak transcription	Brain Hippocampus Middle	brain
13	chr15:75290000-75303600	Weak transcription	Brain Angular Gyrus	brain
14	chr15:75290000-75303800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr15:75290000-75304400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:75290000-75304400	Weak transcription	HepG2	liver
17	chr15:75290000-75309400	Weak transcription	Gastric	stomach
18	chr15:75290000-75316000	Weak transcription	Small Intestine	intestine
19	chr15:75290200-75299200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr15:75290200-75302400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:75290400-75304800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:75290400-75304800	Weak transcription	Brain Anterior Caudate	brain
23	chr15:75290600-75304400	Weak transcription	Fetal Stomach	stomach
24	chr15:75291200-75297800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr15:75291400-75299600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr15:75291400-75305400	Weak transcription	Fetal Brain Male	brain
27	chr15:75291800-75299000	Weak transcription	GM12878-XiMat	blood
28	chr15:75292000-75305000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr15:75292600-75305400	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr15:75293000-75304000	Weak transcription	Fetal Intestine Large	intestine
31	chr15:75293200-75315800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr15:75294000-75297600	Weak transcription	Pancreas	Pancrea
33	chr15:75294600-75312200	Weak transcription	Adipose Nuclei	Adipose
34	chr15:75294600-75315600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr15:75296000-75297800	Strong transcription	Brain Germinal Matrix	brain
36	chr15:75296400-75297200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr15:75296400-75297600	Strong transcription	Fetal Brain Female	brain
38	chr15:75296400-75297800	Strong transcription	Fetal Intestine Small	intestine
39	chr15:75296800-75302000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr15:75296800-75303600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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