Variant report

Variant	rs1822324
Chromosome Location	chr15:75359585-75359586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75351256..75353866-chr15:75357532..75359933,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12899456	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12902887	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12905058	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12905176	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12905302	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12906126	0.89[AMR][1000 genomes]
rs12906783	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12908596	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12908919	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12910578	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12911696	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16973563	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17336944	0.89[AMR][1000 genomes]
rs2304900	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34025186	0.89[AMR][1000 genomes]
rs34142677	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34183160	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34227381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34268734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34767908	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34820454	0.89[AMR][1000 genomes]
rs34911644	0.89[AMR][1000 genomes]
rs35056361	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35205508	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35373072	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35375675	0.89[AMR][1000 genomes]
rs35396991	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35406858	0.89[AMR][1000 genomes]
rs55949919	0.98[ASN][1000 genomes]
rs57057521	0.86[ASN][1000 genomes]
rs57985760	0.91[ASN][1000 genomes]
rs58235768	0.91[ASN][1000 genomes]
rs71401669	0.89[AMR][1000 genomes]
rs71401671	0.89[AMR][1000 genomes]
rs71401672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71401673	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71401675	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71401676	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71401677	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71434254	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7176972	0.98[ASN][1000 genomes]
rs72475967	0.98[ASN][1000 genomes]
rs74023907	0.91[ASN][1000 genomes]
rs74023911	0.90[ASN][1000 genomes]
rs74023915	0.98[ASN][1000 genomes]
rs74023917	0.98[ASN][1000 genomes]
rs74023928	0.98[ASN][1000 genomes]
rs74023944	0.98[ASN][1000 genomes]
rs74025864	0.86[ASN][1000 genomes]
rs8038911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv457205	chr15:75336729-75447773	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv569994	chr15:75336729-75447773	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75340000-75360600	Weak transcription	Gastric	stomach
2	chr15:75342600-75364800	Weak transcription	Primary T cells from cord blood	blood
3	chr15:75342800-75361600	Weak transcription	Brain Hippocampus Middle	brain
4	chr15:75346400-75361600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr15:75347000-75364000	Weak transcription	Brain Substantia Nigra	brain
6	chr15:75356600-75360000	Enhancers	HSMMtube	muscle
7	chr15:75356600-75360200	Enhancers	Osteobl	bone
8	chr15:75356800-75360200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:75356800-75361000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr15:75356800-75366600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr15:75357000-75360600	Weak transcription	Spleen	Spleen
12	chr15:75357000-75363200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:75357000-75365400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:75357200-75359800	Enhancers	Ovary	ovary
15	chr15:75357200-75360200	Enhancers	HMEC	breast
16	chr15:75357200-75360200	Enhancers	HSMM	muscle
17	chr15:75357400-75360200	Enhancers	K562	blood
18	chr15:75357400-75360800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr15:75357400-75362200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr15:75357600-75359800	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr15:75357600-75360000	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr15:75357600-75360200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:75357600-75360200	Enhancers	Hela-S3	cervix
24	chr15:75357600-75360800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr15:75357600-75360800	Enhancers	Primary T cells fromperipheralblood	blood
26	chr15:75357600-75361000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr15:75357600-75361000	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr15:75357600-75361800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr15:75357600-75363200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:75357800-75359800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr15:75357800-75360000	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr15:75357800-75360200	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr15:75358000-75359600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr15:75358000-75360200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr15:75358000-75360400	Enhancers	NHEK	skin
36	chr15:75358200-75360000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr15:75358200-75360200	Enhancers	Muscle Satellite Cultured Cells	--
38	chr15:75358400-75359600	Weak transcription	Right Atrium	heart
39	chr15:75358400-75361600	Weak transcription	Adipose Nuclei	Adipose
40	chr15:75358400-75361600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr15:75358400-75361800	Weak transcription	Right Ventricle	heart
42	chr15:75358400-75368600	Weak transcription	Aorta	Aorta
43	chr15:75358600-75360800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr15:75358600-75361600	Weak transcription	Lung	lung
45	chr15:75358800-75359600	Flanking Active TSS	GM12878-XiMat	blood
46	chr15:75358800-75360200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr15:75358800-75361200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr15:75358800-75361400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr15:75359000-75359600	Enhancers	Dnd41	blood
50	chr15:75359000-75359800	Active TSS	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links