Variant report

Variant	rs71401677
Chromosome Location	chr15:75391047-75391048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75389510..75391425-chr16:87839095..87842030,2	MCF-7	breast:
2	chr15:75375275..75377276-chr15:75389324..75392247,2	MCF-7	breast:
3	chr15:75389748..75391355-chr15:75494076..75495742,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167173	Chromatin interaction
ENSG00000260177	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12899456	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12902887	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12905058	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12905176	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12905302	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12906126	0.82[AMR][1000 genomes]
rs12906783	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12908596	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12908919	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12910578	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12911696	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16973563	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17336944	0.82[AMR][1000 genomes]
rs1822324	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2304900	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34025186	0.82[AMR][1000 genomes]
rs34073905	0.84[EUR][1000 genomes]
rs34142677	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34183160	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34227381	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34268734	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34767908	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34820454	0.82[AMR][1000 genomes]
rs34911644	0.82[AMR][1000 genomes]
rs35056361	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35205508	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35373072	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35375675	0.82[AMR][1000 genomes]
rs35396991	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35406858	0.82[AMR][1000 genomes]
rs55949919	0.91[ASN][1000 genomes]
rs57057521	0.92[ASN][1000 genomes]
rs57190886	0.82[ASN][1000 genomes]
rs57985760	0.84[ASN][1000 genomes]
rs58235768	0.84[ASN][1000 genomes]
rs71401669	0.82[AMR][1000 genomes]
rs71401671	0.82[AMR][1000 genomes]
rs71401672	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71401673	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71401675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71401676	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71434254	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7176972	0.91[ASN][1000 genomes]
rs72475967	0.91[ASN][1000 genomes]
rs73448819	0.81[ASN][1000 genomes]
rs74023907	0.84[ASN][1000 genomes]
rs74023911	0.83[ASN][1000 genomes]
rs74023915	0.91[ASN][1000 genomes]
rs74023917	0.91[ASN][1000 genomes]
rs74023928	0.91[ASN][1000 genomes]
rs74023944	0.91[ASN][1000 genomes]
rs8038911	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv457205	chr15:75336729-75447773	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv569994	chr15:75336729-75447773	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75382800-75396600	Weak transcription	Spleen	Spleen
2	chr15:75383200-75397200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:75388200-75391400	Enhancers	GM12878-XiMat	blood
4	chr15:75389400-75393800	Weak transcription	Primary B cells from cord blood	blood
5	chr15:75390000-75397000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:75390400-75391400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:75390400-75391800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr15:75390800-75391200	Enhancers	HepG2	liver
9	chr15:75390800-75391400	Enhancers	Lung	lung
10	chr15:75390800-75391800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr15:75391000-75391400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr15:75391000-75391400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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