Variant report

Variant	rs35406858
Chromosome Location	chr15:75279669-75279670
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12899456	0.89[AMR][1000 genomes]
rs12902887	0.87[AMR][1000 genomes]
rs12905058	0.92[AMR][1000 genomes]
rs12905176	0.89[AMR][1000 genomes]
rs12905302	0.80[AMR][1000 genomes]
rs12906126	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12906783	0.87[AMR][1000 genomes]
rs12908596	0.84[AMR][1000 genomes]
rs12908919	0.89[AMR][1000 genomes]
rs12910578	0.82[AMR][1000 genomes]
rs12911696	0.87[AMR][1000 genomes]
rs16973563	0.89[AMR][1000 genomes]
rs17336944	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1822324	0.89[AMR][1000 genomes]
rs2304900	0.89[AMR][1000 genomes]
rs34025186	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34142677	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34183160	0.89[AMR][1000 genomes]
rs34227381	0.89[AMR][1000 genomes]
rs34268734	0.89[AMR][1000 genomes]
rs34293738	0.88[AMR][1000 genomes]
rs34359839	0.88[AMR][1000 genomes]
rs34767908	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34820454	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34911644	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35056361	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35205508	0.89[AMR][1000 genomes]
rs35373072	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35375675	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35396991	0.89[AMR][1000 genomes]
rs35933822	0.88[AMR][1000 genomes]
rs71401669	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71401671	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71401672	0.89[AMR][1000 genomes]
rs71401673	0.89[AMR][1000 genomes]
rs71401675	0.82[AMR][1000 genomes]
rs71401676	0.80[AMR][1000 genomes]
rs71401677	0.82[AMR][1000 genomes]
rs71434254	0.87[AMR][1000 genomes]
rs8038911	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv1612	chr15:75247725-75281284	Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv542435	chr15:75271788-75321117	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35406858	ULK3	cis	Thyroid	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75279000-75280800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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