Variant report

Variant	rs74023917
Chromosome Location	chr15:75336510-75336511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75333855..75341122-chr15:75492635..75495814,9	MCF-7	breast:
2	chr15:75318584..75321988-chr15:75334747..75339188,4	K562	blood:
3	chr15:75314438..75320960-chr15:75334023..75339188,6	K562	blood:
4	chr15:75335868..75337626-chr15:75660366..75661953,2	MCF-7	breast:
5	chr15:75336184..75338674-chr15:75501578..75503500,2	K562	blood:
6	chr15:75331603..75340227-chr15:75492938..75499942,15	K562	blood:
7	chr15:75334055..75342899-chr15:75492444..75498798,20	K562	blood:
8	chr15:75332512..75342228-chr15:75491817..75496419,22	MCF-7	breast:
9	chr15:75335299..75336533-chr15:75494000..75494818,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000140400	Chromatin interaction
ENSG00000260483	Chromatin interaction
ENSG00000260274	Chromatin interaction
ENSG00000167173	Chromatin interaction
ENSG00000138621	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12902887	0.98[ASN][1000 genomes]
rs12905058	0.92[ASN][1000 genomes]
rs12905176	0.95[ASN][1000 genomes]
rs12905302	0.91[ASN][1000 genomes]
rs12906783	0.98[ASN][1000 genomes]
rs12908596	0.98[ASN][1000 genomes]
rs12908919	1.00[ASN][1000 genomes]
rs12910578	0.87[ASN][1000 genomes]
rs12911696	0.96[ASN][1000 genomes]
rs16973563	0.98[ASN][1000 genomes]
rs1822324	0.98[ASN][1000 genomes]
rs2304900	1.00[ASN][1000 genomes]
rs34142677	1.00[ASN][1000 genomes]
rs34183160	0.98[ASN][1000 genomes]
rs34227381	1.00[ASN][1000 genomes]
rs34268734	0.95[ASN][1000 genomes]
rs34767908	1.00[ASN][1000 genomes]
rs35056361	1.00[ASN][1000 genomes]
rs35205508	0.98[ASN][1000 genomes]
rs35373072	1.00[ASN][1000 genomes]
rs55949919	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57057521	0.88[ASN][1000 genomes]
rs57985760	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs58235768	0.93[ASN][1000 genomes]
rs71401672	0.98[ASN][1000 genomes]
rs71401675	0.91[ASN][1000 genomes]
rs71401676	0.89[ASN][1000 genomes]
rs71401677	0.91[ASN][1000 genomes]
rs7176972	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72475967	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74023907	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs74023911	0.92[ASN][1000 genomes]
rs74023915	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74023928	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74023944	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs74025864	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs8038911	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75316600-75336800	Weak transcription	Fetal Brain Female	brain
2	chr15:75316800-75338800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:75318000-75341400	Weak transcription	Brain Germinal Matrix	brain
4	chr15:75322200-75339000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:75322400-75336800	Weak transcription	Primary T cells from cord blood	blood
6	chr15:75322400-75339200	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr15:75322600-75338600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr15:75323000-75336600	Weak transcription	Dnd41	blood
9	chr15:75324600-75339200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr15:75328600-75338800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr15:75328800-75350400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr15:75329200-75338800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr15:75329200-75350400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr15:75329400-75346800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr15:75330600-75340000	Weak transcription	NHEK	skin
16	chr15:75332000-75337000	Weak transcription	Psoas Muscle	Psoas
17	chr15:75333600-75338400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:75333600-75341000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr15:75333800-75337200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr15:75333800-75337400	Enhancers	Stomach Mucosa	stomach
21	chr15:75334000-75344600	Enhancers	Placenta	Placenta
22	chr15:75334200-75336600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr15:75334200-75336800	Enhancers	Pancreas	Pancrea
24	chr15:75334200-75337000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:75334200-75337000	Enhancers	Fetal Muscle Trunk	muscle
26	chr15:75334200-75340400	Genic enhancers	Fetal Intestine Small	intestine
27	chr15:75334200-75340600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr15:75334200-75344600	Enhancers	Right Ventricle	heart
29	chr15:75334400-75336800	Enhancers	Fetal Intestine Large	intestine
30	chr15:75334400-75337000	Enhancers	NHDF-Ad	bronchial
31	chr15:75334400-75343200	Enhancers	Fetal Heart	heart
32	chr15:75334600-75336800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:75334600-75337000	Enhancers	Primary B cells from peripheral blood	blood
34	chr15:75334600-75340400	Enhancers	Liver	Liver
35	chr15:75334600-75340800	Enhancers	Fetal Muscle Leg	muscle
36	chr15:75334600-75341000	Enhancers	Lung	lung
37	chr15:75334600-75343200	Enhancers	Right Atrium	heart
38	chr15:75334800-75344600	Enhancers	Left Ventricle	heart
39	chr15:75335000-75336600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr15:75335000-75336600	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr15:75335000-75336800	Enhancers	NHLF	lung
42	chr15:75335000-75337200	Enhancers	Placenta Amnion	Placenta Amnion
43	chr15:75335000-75337200	Enhancers	HUVEC	blood vessel
44	chr15:75335000-75337600	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr15:75335000-75340200	Enhancers	Primary T cells fromperipheralblood	blood
46	chr15:75335000-75340400	Enhancers	Fetal Thymus	thymus
47	chr15:75335200-75336600	Enhancers	Brain Anterior Caudate	brain
48	chr15:75335200-75336800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr15:75335200-75336800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr15:75335200-75337200	Enhancers	HMEC	breast

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