Variant report

Variant	rs34042174
Chromosome Location	chr7:117203421-117203422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1429560	0.93[AFR][1000 genomes]
rs34010645	0.85[AFR][1000 genomes]
rs34066264	0.93[AFR][1000 genomes]
rs34487764	0.93[AFR][1000 genomes]
rs34721490	0.93[AFR][1000 genomes]
rs34735848	0.93[AFR][1000 genomes]
rs34792223	0.85[AFR][1000 genomes]
rs35141610	0.85[AFR][1000 genomes]
rs35273275	0.93[AFR][1000 genomes]
rs35445590	0.85[AFR][1000 genomes]
rs35521564	0.85[AFR][1000 genomes]
rs35531523	0.86[AFR][1000 genomes]
rs35853854	0.93[AFR][1000 genomes]
rs35859638	0.93[AFR][1000 genomes]
rs35913327	0.85[AFR][1000 genomes]
rs4570091	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889077	chr7:117129404-117238379	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv889078	chr7:117135025-117246315	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv1800675	chr7:117159386-117204462	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv889080	chr7:117176248-117238379	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv889081	chr7:117203417-117238379	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv889082	chr7:117203417-117246315	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv889083	chr7:117203417-117256374	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117173000-117208000	Weak transcription	Pancreas	Pancrea
2	chr7:117181400-117213400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:117185800-117203600	Weak transcription	Fetal Intestine Large	intestine
4	chr7:117187000-117205200	Weak transcription	Stomach Mucosa	stomach
5	chr7:117193400-117205200	Weak transcription	Fetal Intestine Small	intestine
6	chr7:117195800-117206000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:117196000-117203800	Weak transcription	Dnd41	blood
8	chr7:117202400-117212600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr7:117202600-117204800	Enhancers	Fetal Heart	heart
10	chr7:117203200-117204000	Weak transcription	Placenta Amnion	Placenta Amnion

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links