Variant report

Variant	rs34721490
Chromosome Location	chr7:117212012-117212013
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1429560	1.00[AFR][1000 genomes]
rs34010645	0.92[AFR][1000 genomes]
rs34042174	0.93[AFR][1000 genomes]
rs34066264	1.00[AFR][1000 genomes]
rs34400990	0.84[AFR][1000 genomes]
rs34487764	1.00[AFR][1000 genomes]
rs34533224	0.84[AFR][1000 genomes]
rs34735848	0.85[AFR][1000 genomes]
rs34792223	0.92[AFR][1000 genomes]
rs34849016	0.84[AFR][1000 genomes]
rs35141610	0.92[AFR][1000 genomes]
rs35273275	0.85[AFR][1000 genomes]
rs35445590	0.92[AFR][1000 genomes]
rs35521564	0.92[AFR][1000 genomes]
rs35531523	0.93[AFR][1000 genomes]
rs35653285	0.84[AFR][1000 genomes]
rs35853854	1.00[AFR][1000 genomes]
rs35859638	0.85[AFR][1000 genomes]
rs35913327	0.92[AFR][1000 genomes]
rs36014389	0.84[AFR][1000 genomes]
rs4570091	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889077	chr7:117129404-117238379	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv889078	chr7:117135025-117246315	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv889080	chr7:117176248-117238379	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv889081	chr7:117203417-117238379	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv889082	chr7:117203417-117246315	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889083	chr7:117203417-117256374	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117181400-117213400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr7:117202400-117212600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:117206400-117216800	Weak transcription	Small Intestine	intestine
4	chr7:117206600-117217600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr7:117207000-117212200	Weak transcription	Stomach Mucosa	stomach
6	chr7:117208600-117232400	Weak transcription	Pancreas	Pancrea
7	chr7:117211400-117214200	Enhancers	Fetal Intestine Large	intestine
8	chr7:117211600-117214200	Enhancers	Fetal Intestine Small	intestine

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