Variant report
| Variant | rs36014389 |
|---|---|
| Chromosome Location | chr7:117114565-117114566 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | E2F4 | chr7:117114407-117114602 | MCF10A-Er-Src | breast: | n/a | chr7:117114524-117114533 |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:117113776..117115574-chr7:117115757..117117512,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CFTR | TF binding region |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1429560 | 0.84[AFR][1000 genomes] |
| rs34010645 | 0.91[AFR][1000 genomes] |
| rs34066264 | 0.84[AFR][1000 genomes] |
| rs34400990 | 1.00[AFR][1000 genomes] |
| rs34487764 | 0.84[AFR][1000 genomes] |
| rs34533224 | 1.00[AFR][1000 genomes] |
| rs34721490 | 0.84[AFR][1000 genomes] |
| rs34735848 | 0.84[AFR][1000 genomes] |
| rs34792223 | 0.91[AFR][1000 genomes] |
| rs34849016 | 1.00[AFR][1000 genomes] |
| rs35141610 | 0.91[AFR][1000 genomes] |
| rs35273275 | 0.84[AFR][1000 genomes] |
| rs35445590 | 0.91[AFR][1000 genomes] |
| rs35521564 | 0.91[AFR][1000 genomes] |
| rs35653285 | 1.00[AFR][1000 genomes] |
| rs35853854 | 0.84[AFR][1000 genomes] |
| rs35859638 | 0.84[AFR][1000 genomes] |
| rs35913327 | 0.91[AFR][1000 genomes] |
| rs4570091 | 0.84[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv889076 | chr7:117064625-117147547 | Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:117113200-117119200 | Weak transcription | Brain Hippocampus Middle | brain |
