Variant report

Variant	rs35445590
Chromosome Location	chr7:117132415-117132416
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1429560	0.92[AFR][1000 genomes]
rs34010645	1.00[AFR][1000 genomes]
rs34042174	0.85[AFR][1000 genomes]
rs34066264	0.92[AFR][1000 genomes]
rs34400990	0.91[AFR][1000 genomes]
rs34487764	0.92[AFR][1000 genomes]
rs34533224	0.91[AFR][1000 genomes]
rs34721490	0.92[AFR][1000 genomes]
rs34735848	0.92[AFR][1000 genomes]
rs34792223	1.00[AFR][1000 genomes]
rs34849016	0.91[AFR][1000 genomes]
rs35141610	1.00[AFR][1000 genomes]
rs35273275	0.92[AFR][1000 genomes]
rs35521564	1.00[AFR][1000 genomes]
rs35531523	0.85[AFR][1000 genomes]
rs35653285	0.91[AFR][1000 genomes]
rs35853854	0.92[AFR][1000 genomes]
rs35859638	0.92[AFR][1000 genomes]
rs35913327	1.00[AFR][1000 genomes]
rs36014389	0.91[AFR][1000 genomes]
rs4570091	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv889077	chr7:117129404-117238379	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117126800-117151200	Weak transcription	Pancreas	Pancrea
2	chr7:117129800-117144600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:117130800-117134200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:117131000-117134600	Weak transcription	Fetal Intestine Large	intestine
5	chr7:117131200-117139600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:117132200-117132600	Weak transcription	Fetal Intestine Small	intestine
7	chr7:117132400-117133600	Enhancers	Liver	Liver
8	chr7:117132400-117134000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr7:117132400-117134200	Enhancers	Dnd41	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links