Variant report

Variant	rs35913327
Chromosome Location	chr7:117186140-117186141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1429560	0.92[AFR][1000 genomes]
rs34010645	1.00[AFR][1000 genomes]
rs34042174	0.85[AFR][1000 genomes]
rs34066264	0.92[AFR][1000 genomes]
rs34400990	0.91[AFR][1000 genomes]
rs34487764	0.92[AFR][1000 genomes]
rs34533224	0.91[AFR][1000 genomes]
rs34721490	0.92[AFR][1000 genomes]
rs34735848	0.92[AFR][1000 genomes]
rs34792223	1.00[AFR][1000 genomes]
rs34849016	0.91[AFR][1000 genomes]
rs35141610	1.00[AFR][1000 genomes]
rs35273275	0.92[AFR][1000 genomes]
rs35445590	1.00[AFR][1000 genomes]
rs35521564	1.00[AFR][1000 genomes]
rs35531523	0.85[AFR][1000 genomes]
rs35653285	0.91[AFR][1000 genomes]
rs35853854	0.92[AFR][1000 genomes]
rs35859638	0.92[AFR][1000 genomes]
rs36014389	0.91[AFR][1000 genomes]
rs4570091	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889077	chr7:117129404-117238379	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv889078	chr7:117135025-117246315	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv889079	chr7:117156341-117199533	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1800675	chr7:117159386-117204462	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv889080	chr7:117176248-117238379	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117173000-117208000	Weak transcription	Pancreas	Pancrea
2	chr7:117179200-117191800	Weak transcription	Fetal Intestine Small	intestine
3	chr7:117181400-117213400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:117185800-117186400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr7:117185800-117195400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:117185800-117203600	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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